BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC10FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1396 0.0
>3x_Contig1624
Length = 12551
Score = 1396 bits (704), Expect = 0.0
Identities = 814/838 (97%), Gaps = 10/838 (1%)
Strand = Plus / Minus
Query: 87 tttcggtgaatctttcc-tacaactggtgaagaatttgtattgttccgattggagtgagc 145
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11708 tttcggtgaatctttccatacaactggtgaagaatttgtattgttccgattggagtgagc 11649
Query: 146 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11648 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 11589
Query: 206 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11588 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 11529
Query: 266 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11528 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 11469
Query: 326 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11468 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 11409
Query: 386 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11408 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 11349
Query: 446 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11348 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 11289
Query: 506 cctgcagaactcattgngaaattggtaatagaatagttgactgagttgattgctaaagca 565
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11288 cctgcagaactcattgggaaattggtaatagaatagttgactgagttgattgctaaagca 11229
Query: 566 ggtactaaagaaagtgcaattgtcttttctttccgatctcttctttttaacagaaactta 625
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 11228 ggtactaaagaaagtgcaattgtc-tttctttccgatctcttctttttaacagaaactaa 11170
Query: 626 atttaagacaattctgtcaaagcattatgtcaaaaggataaatatgattgaagcttgaaa 685
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 11169 attaaagacaattctgtcaaagcattatgtc-aaaggataaatatgatagaagcttgaaa 11111
Query: 686 aacttgaacatgctaagaagacaagtgtttaacaatgttactaatactactgaatctacg 745
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 11110 aacttgaacatgctaagaagaccagtgttaaacaatgttactaatactactgaatctacg 11051
Query: 746 tttcggtaaagtttttgaggcaggctaaatcaagaactgc-gaatagcaggacgaattat 804
|||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct: 11050 -ttcggtaaag-ttttgaggcaggctaaatcaag-actgcagaatagcaggacgaataat 10994
Query: 805 cttccccaggtta-cgcaaacttgtattcgaacac-anaccggcaccattgagagatgac 862
|||||||||| || |||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct: 10993 cttccccagggtaccgcaaactcgtattcgaacacaaaaccggcaccattgagagatgac 10934
Query: 863 attatggtacctgtagattagggagaattacaatccgctagctaagattgatgaaaga 920
|| |||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 10933 ataatggtacctg-aggataaggagaattacaatccgctagctaagattgatgaaaga 10877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7850
Number of Sequences: 1807
Number of extensions: 7850
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)