BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC10RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1384 0.0
>3x_Contig1386
Length = 5452
Score = 1384 bits (698), Expect = 0.0
Identities = 760/775 (98%), Gaps = 5/775 (0%)
Strand = Plus / Minus
Query: 48 tggaagaagagaaggccagattggaacaagaaattaaagaagctcaagaacttcaccaac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggaagaagagaaggccagattggaacaagaaattaaagaagctcaagaacttcaccaac 735
Query: 108 aaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggtcaatgaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggtcaatgaaa 675
Query: 168 ttaataccgaaatttcttcactacttgcttcgttaggtttaattcaacaagaaattgcca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaataccgaaatttcttcactacttgcttcgttaggtttaattcaacaagaaattgcca 615
Query: 228 accaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaaacaacatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 accaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaaacaacatg 555
Query: 288 aagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcgtttagaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcgtttagaaa 495
Query: 348 agcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacgaagaagagc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacgaagaagagc 435
Query: 408 tggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgcaacgtgaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgcaacgtgaag 375
Query: 468 ctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacgtgaaagaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacgtgaaagaa 315
Query: 528 ctcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccgaagacaaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccgaagacaaga 255
Query: 588 gactggaagctgaacacgaagaaaagttgagaaggcaagcagaagctgccagtgcagtcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gactggaagctgaacacgaagaaaagttgagaaggcaagcagaagctgccagtgcagtcg 195
Query: 648 aaaatgccctgnagagtagcaaccaanaaacgaaagcagctgttccaccttgcaacacca 707
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 194 aaaatgccctgaagagtagcaacaaaaaaacgaaagcagctgttccacctgcaaacacca 135
Query: 708 caaattcttctctatatgactacgaaa-cgttgaag-agtcattactgttgattgaatta 765
||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |
Sbjct: 134 caaattcttctctatatgactacgaaaccgttgaagaagtcataactgttgattgaataa 75
Query: 766 c-anagagatctt-aaacgaaataac-ttaaacattggactttgtattttctaaa 817
| | ||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 74 caaaagagatcttaaaacgaaataacattaaacattggactttgtaatttctaaa 20
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7643
Number of Sequences: 1807
Number of extensions: 7643
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)