BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC11FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1560 0.0
>3x_Contig1502
Length = 14970
Score = 1560 bits (787), Expect = 0.0
Identities = 837/851 (98%), Gaps = 2/851 (0%)
Strand = Plus / Plus
Query: 85 tgggctgaatagtccattaagctcccgtaaagcttcattagcttctacgtcaagttcaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 tgggctgaatagtccattaagctcccgtaaagcttcattagcttctacgtcaagttcaat 2653
Query: 145 ttctcgtgtcagctcttcaagcgatagaatgggagagtcaatttacagaagtccaggatc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 ttctcgtgtcagctcttcaagcgatagaatgggagagtcaatttacagaagtccaggatc 2713
Query: 205 tgaagaaatactgttttttgaatgtttcgctaccaccattactgcctgtcccaagtgaac 264
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 tgaagaaatactgagtct-gaatgtttcgctaccaccattactgcctgtcccaagtgaac 2772
Query: 265 cgctccctgcgctacctacacatacatcgcatgattttagtgttgacaatcgactttcgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 cgctccctgcgctacctacacatacatcgcatgattttagtgttgacaatcgactttcgg 2832
Query: 325 atcatttttttccggatactcgctatcgaacttcaacttctccattatcaagtagaagat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 atcatttttttccggatactcgctatcgaacttcaacttctccattatcaagtagaagat 2892
Query: 385 catctttacaccatgatatttctcaacatatatcacaagagaatatctatccaaacagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 catctttacaccatgatatttctcaacatatatcacaagagaatatctatccaaacagaa 2952
Query: 445 ttgatgaggtatttgtcggagatcctttacacaaaccagataacgaagctgatggcatga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 ttgatgaggtatttgtcggagatcctttacacaaaccagataacgaagctgatggcatga 3012
Query: 505 ctacccctcaaaacgagcgaaactcatttgcttcaaatactgagagtctgaccagtcaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 ctacccctcaaaacgagcgaaactcatttgcttcaaatactgagagtctgaccagtcaaa 3072
Query: 565 ctctgaattcgggcgatgttgatttcgagcctctattcatacctaggtcattatatatgc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 ctctgaattcgggcgatgttgatttcgagcctctattcatacctaggtcattatatatgc 3132
Query: 625 cttggcctacagaaactgttaaagcgttcgcggaattttttttcactggccaaattgatg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 cttggcctacagaaactgttaaagcgttcgcggaattttttttcactggccaaattgatg 3192
Query: 685 gtaaatggcctctatcacctgtggcggtgggattattgaatatggctaagatttatgaag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3193 gtaaatggcctctatcacctgtggcggtgggattattgaatatggctaagatttatgaag 3252
Query: 745 tgccattgctcttcgatctaatgcttgaagtattttattctatcattcggaagaaagagg 804
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3253 tgccattgctcttcgatctaatgcttgaagtattttattctatcatcgggaagaaagagg 3312
Query: 805 -aagcttgtttgtgattagcaaatctctaaaagatgctttcctcaatcgagtctcactgc 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 aaagcttgtttgtgattagcaaatctctaaaagatgctttcctcaatcgagtctcactgc 3372
Query: 864 tttttgaagatgacccagatgctttgtcacagtattttgaaaatcacaaaaattaccggg 923
||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| ||
Sbjct: 3373 tttttgaagatgaccaagatgctatgcaacagtatttggaaaatcacaaaaattaccagg 3432
Query: 924 aattccaggct 934
||| |||||||
Sbjct: 3433 aataccaggct 3443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6464
Number of Sequences: 1807
Number of extensions: 6464
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)