BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1684 1374 0.0
>3x_Contig1684
Length = 14609
Score = 1374 bits (693), Expect = 0.0
Identities = 817/848 (96%), Gaps = 9/848 (1%)
Strand = Plus / Minus
Query: 39 acggattgggagcaaagtcatgttagtggagcattatcggctgaacagatagatgaaagg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13052 acggattgggagcaaagtcatgttagtggagcattatcggctgaacagatagatgaaagg 12993
Query: 99 cacaagaagatagcactcgaagaagagaaagaaaagaaagacttgatagaaaaagaattg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12992 cacaagaagatagcactcgaagaagagaaagaaaagaaagacttgatagaaaaagaattg 12933
Query: 159 caggcggcaaaggaaagaatcaaagaggaaaaagatgctaaaagaggtcccggaatgaaa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12932 caggcggcaaaggaaagaatcaaagaggaaaaagatgctaaaagaggtcccggaatgaaa 12873
Query: 219 cttggcgccgcatcctctaacgttcaaataaatttgaactctttaactgatgatcaacgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12872 cttggcgccgcatcctctaacgttcaaataaatttgaactctttaactgatgatcaacgg 12813
Query: 279 atgagattgatgagagagcagcgagctcgtgcagctgaagcgagaatgaaaagattttct 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12812 atgagattgatgagagagcagcgagctcgtgcagctgaagcgagaatgaaaagattttct 12753
Query: 339 ggtaactagatgcaagtataaatagtaacatatataacttttacacggagtcttttacca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12752 ggtaactagatgcaagtataaatagtaacatatataacttttacacggagtcttttacca 12693
Query: 399 aagcataagtgatgtactgtcgtgcatcatcaaagacgttattcatagcttcgtcaatta 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12692 aagcataagtgatgtactgtcgtgcatcatcaaagacgttattcatagcttcgtcaatta 12633
Query: 459 agtcattagtcttttgtggatcaatatgtttgtatcccaataggcattttctcatgattt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12632 agtcattagtcttttgtggatcaatatgtttgtatcccaataggcattttctcatgattt 12573
Query: 519 ctgactttgttccatttcgaagtatctcctccttctctataattttttgggcttctagag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12572 ctgactttgttccatttcgaagtatctcctccttctctataattttttgggcttctagag 12513
Query: 579 cattgatccaaattgaagcaggaggattgtttgatggagtcgcagcagcctggaattctg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12512 cattgatccaaattgaagcaggaggattgtttgatggagtcgcagcagcctggtattctg 12453
Query: 639 gctgggcgttggcttcatcagtaccccgttatctcttc-tctttaagcactttttactt- 696
||||||||||||||||||||||| |||||||||||||| |||| |||||| || |||||
Sbjct: 12452 gctgggcgttggcttcatcagta-cccgttatctcttcttcttcaagcac-ttctacttc 12395
Query: 697 accagaacaattacaaattaaatcgtgggtattggataaagtggacaaatt-atggtaaa 755
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 12394 accagaacaattacaaattaagtcgtgggtattggataaagtggacaaattaatggtaaa 12335
Query: 756 aaaagcctttaactctttcctgctgaaaaaga-catcataatttctggaatgatctgggg 814
|| |||| ||||| |||||||||||||||| |||||| |||| | || ||||||| ||
Sbjct: 12334 caagtccttcaactc-ttcctgctgaaaaagatcatcatcattttttgattgatctgtgg 12276
Query: 815 gacctggtccaaaaactttttaaaaagccctttttccattaactgtctttgaagaatctt 874
|| |||||| ||||||||| ||||| || ||| |||||||||||||||||| |||||
Sbjct: 12275 cac--tgtccaagaactttttagaaagcgctattttcattaactgtctttgaagtatctt 12218
Query: 875 cttatcaa 882
|| |||||
Sbjct: 12217 ctcatcaa 12210
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8362
Number of Sequences: 1807
Number of extensions: 8362
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)