BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC12RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1067 1499 0.0
>3x_Contig1067
Length = 4823
Score = 1499 bits (756), Expect = 0.0
Identities = 825/843 (97%), Gaps = 4/843 (0%)
Strand = Plus / Plus
Query: 52 atgaggaatagctcattatgcaagagacaaatacatctcagttctgtcaagtatccttca 111
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 atgaggaatagctcaataagcaagagacaaatacatctcagttctgtcaagtatccttca 1401
Query: 112 tcagtaagaaataaatatattgcaggttattgaaaatattggctgcagatggtctaatgc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tcagtaagaaataaatatattgcaggttattgaaaatattggctgcagatggtctaatgc 1461
Query: 172 ttcggaggaaatcatgtttcttcttataagaatttggcgcctatttttttctcagatggc 231
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 1462 ttcggaggaaatcatgtttcttcttataagaatttggcgcctatatcgtactcagatggc 1521
Query: 232 gtacgcatttagttacatcaaggaaataattgctcttgtttttgtccttgagtagattag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtacgcatttagttacatcaaggaaataattgctcttgtttttgtccttgagtagattag 1581
Query: 292 ctttttctctatcagtagtgggaattagcattatgcttctaccacgatttttttatcctt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 ctttttctctatcagtagtgggaattagcattatgcttctaccacgatttttttatcctt 1641
Query: 352 tttccgtcactaggaaccaaggcaccttacgaaagagttacgtcaactaacattaagaag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 tttccgtcactaggaaccaaggcaccttacgaaagagttacgtcaactaacattaagaag 1701
Query: 412 aaaacagataaaagggtttctgtctatcaagttgaatatcttcgaacgaagacctatgta 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aaaacagataaaagggtttctgtctatcaagttgaatatcttcgaacgaagacctatgta 1761
Query: 472 aggacaacagggtatttttcgggcaggtttcttcatttttttgctaaataacactgccaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 aggacaacagggtatttttcgggcaggtttcttcatttttttgctaaataacactgccaa 1821
Query: 532 gactagcatcaagtcacagttgttgtacttgtgatgaagattggcccttttcaaataagt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 gactagcatcaagtcacagttgttgtacttgtgatgaagattggcccttttcaaataagt 1881
Query: 592 ttcctgcttcaattacttggcttgaacaatcaacctttttgtcttgcccagaatatgaaa 651
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1882 ttcctgcttcaattacttggcttgaacaatcaacctttttgtcttgcccagaaaatgaaa 1941
Query: 652 caaccaagtgaagtttttcaacttggcagcttgcatatacattctgttggcagcaattan 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 caaccaagtgaagtttttcaacttggcagcttgcatatacattctgttggcagcaattag 2001
Query: 712 gctcaaatatccaggatttgcaacttctgtcattaaagacgtttgattct-aaaacttat 770
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2002 gctcaaatatccaggatttgcaacttctgtcattaaagacgtttgattctaaaaacttat 2061
Query: 771 aatacatctttttttcggattaagctcttttccttacttttttccacatatgattatttt 830
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 aatacatc-tcttttcggattaagctcttttccttacttttttccacatatgattatttt 2120
Query: 831 catttttaaaattttttttttgtgaatcgaaattttcgaactttctcagttagagtgcaa 890
||||||| |||||||||||| ||||||||||| ||||||| |||||||||| ||||||
Sbjct: 2121 cattttt-taattttttttttttgaatcgaaatattcgaac-ttctcagttaaggtgcaa 2178
Query: 891 ttg 893
|||
Sbjct: 2179 ttg 2181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9520
Number of Sequences: 1807
Number of extensions: 9520
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)