BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD02FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1562 0.0
3x_Contig56 327 2e-89
>3x_Contig1719
Length = 15804
Score = 1562 bits (788), Expect = 0.0
Identities = 839/853 (98%), Gaps = 3/853 (0%)
Strand = Plus / Minus
Query: 88 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 2839
Query: 148 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 2779
Query: 208 aactgtgaactatctttaataatacaatctcattatttaatgataatttctataaatgaa 267
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 aactgtgaacta-caaaaataatacaatctcattatttaatgataatttctataaatgaa 2720
Query: 268 gtggacatccacgccattttcgaacacttgacctatttcttcaagtgataaacctttcac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 gtggacatccacgccattttcgaacacttgacctatttcttcaagtgataaacctttcac 2660
Query: 328 ctccgggtaccaaatataaacgaacagccaattgaatatagtaaataaggcaaagagtag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ctccgggtaccaaatataaacgaacagccaattgaatatagtaaataaggcaaagagtag 2600
Query: 388 catcgtattttcgtttccaatcctatctgtgatagttaaataagtcaaagacaacacaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 catcgtattttcgtttccaatcctatctgtgatagttaaataagtcaaagacaacacaga 2540
Query: 448 gttagtcaaccaattagtacaggaaatcatagatccgcccacagctcttcggttcagggg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 gttagtcaaccaattagtacaggaaatcatagatccgcccacagctcttcggttcagggg 2480
Query: 508 taaaaattcgacactgctccacggtactactcccataccagtagcgtaagcaccaacata 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 taaaaattcgacactgctccacggtactactcccataccagtagcgtaagcaccaacata 2420
Query: 568 aacaatcacagatacaaccaatagcgctaggttattcaattcgaaaccaacagaacataa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 aacaatcacagatacaaccaatagcgctaggttattcaattcgaaaccaacagaacataa 2360
Query: 628 taacaaacctactgtcataatccatatagtcatgagtagcaaggttctttttcccatcgt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 taacaaacctactgtcataatccatatagtcatgagtagcaaggttctttttcccatcgt 2300
Query: 688 gtcaatcaacttcattgctagtaaggtgaaagaaaaatttgtaaacgcaacgatgattgc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 gtcaatcaacttcattgctagtaaggtgaaagaaaaatttgtaaacgcaacgatgattgc 2240
Query: 748 cggaactaaaggattggtaaatcctacttgctcgaaaatcgttgcggaat-atacatgaa 806
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2239 cggaactaaaggattggtaaatcctacttgctcgaaaatcgttgcggaataatacatgaa 2180
Query: 807 tgcngtgaagccacttgtctgttgaaaaaacattaacacacagccaatgattaaggctcg 866
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 tgcgttgaagccacttgtctgttgaaaaaacattaacacacagccaatgattaaggctcg 2120
Query: 867 tttattttttcccttccatctatgtcttnnttttacctagttgctcattggagtacgtag 926
|||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 2119 tttactttttccctcccatctatgtctt-tttttacctagttgctcattgtagtacgtag 2061
Query: 927 caccaaaanaaga 939
|||| ||| ||||
Sbjct: 2060 cacccaaagaaga 2048
>3x_Contig56
Length = 1175
Score = 327 bits (165), Expect = 2e-89
Identities = 188/193 (97%), Gaps = 2/193 (1%)
Strand = Plus / Minus
Query: 88 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 142
Query: 148 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 82
Query: 208 aactgtgaactatctttaataatacaatctcattatttaatgataatttctataaatgaa 267
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aactgtgaacta-caaaaataatacaatctcattatttaatgataatttctataaatgaa 23
Query: 268 gtggacatccacg 280
|| ||||||||||
Sbjct: 22 gt-gacatccacg 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)