BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD02RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1596 0.0
>3x_Contig1716
Length = 19108
Score = 1596 bits (805), Expect = 0.0
Identities = 881/900 (97%), Gaps = 5/900 (0%)
Strand = Plus / Minus
Query: 42 gcttcgcgtgacagtgtcaacattaaaa-cagtgacgaaaactttcagaattattcctta 100
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 4812 gcttcgcgtgacagtgtcaacaagaaaaacagtgacgaaaactttcagaattattcctta 4753
Query: 101 acagaagatcattttgagatgaatcccgactgctctgacatcaaatcaattattctagaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 acagaagatcattttgagatgaatcccgactgctctgacatcaaatcaattattctagaa 4693
Query: 161 tggtttaccccaaatcgtgaatgcgtgcattcgatgaacaagaaatatggaaactttttg 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4692 tggtttaccccaaatcgtgaatgcgtgcattcgatgaacaagaaatatggaaacaaatgg 4633
Query: 221 cgactgacagaaccaaatctgtccttgtacaggatacggaagccaattgttcagtattac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 cgactgacagaaccaaatctgtccttgtacaggatacggaagccaattgttcagtattac 4573
Query: 281 atacatctaatcaatgtagaaaacctcaataagtttgacgcattgaataagctcgaagcc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4572 atacatctaatcaatgtagaaaacctcaataagtttgacgcattgaataagctcgaagcc 4513
Query: 341 gtgctcgaaaagcatcactccgttccgcttctctcttccttcttggagaaagccaagaaa 400
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 gtgctcgaaaagcaacactccgttccgcttctctcttccttcttggagaaagccaagaaa 4453
Query: 401 aacggctatgcatctgtcacgtgaacattttttgttaagcatgcttactttgcatgaggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4452 aacggctatgcatctgtcacgtgaacattttttgttaagcatgcttactttgcatgaggt 4393
Query: 461 acataaatgaaaaccgtataatagaaaattgtaaccatatttagcaacgaagcagtaaag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392 acataaatgaaaaccgtataatagaaaattgtaaccatatttagcaacgaagcagtaaag 4333
Query: 521 ttgcttctgaacaaagtcataactagctaagaacctttcagtatttacttgaaaagaaaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4332 ttgcttctgaacaaagtcataactagctaagaacctttcagtatttacttgaaaagaaaa 4273
Query: 581 ctataacgagcctgatgagattatgagattctatatattgtttttgtacctatttggtac 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4272 ctataacgagcctgatgagattatgagattctatatattgtttttgtacctatttggtac 4213
Query: 641 tctagtagcggccatccatcttgatgacccgcttactaacttcaactttactcctcctat 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4212 tctagtagcggccatccatcttgatgacccgcttactaacttcaactttactcctcctat 4153
Query: 701 aaaatctcctaacgaccttctggaccacgagcggacgttaactgacggtgaaattccaag 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 aaaatctcctaacgaccttctggaccacgagcggacgttaactgacggtgaaattccaag 4093
Query: 761 gtatgttctagatcattcaccgntgatccatctttacagcgaagaaaaatatcttccagg 820
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4092 gtatgttctagatcattcaccgttgatccatctttacagcgaagaaaaatatcttccagg 4033
Query: 821 agacatttcatcctttgtaccgcactttcaattggt-acatcgaa-tatgagacggttgt 878
|||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 4032 agacatccaatcctttgtaccgcactttcaattggtaacatcgaattatgagacggttgt 3973
Query: 879 aaatgaacctttgaaattat-agatctcaggggtgaatat-acgttgcaggggaagtttt 936
|||||||||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 3972 aaatgaacctctgaaaatatcagatctcaagggtgaatataacgttgcaggggaagtttt 3913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7102
Number of Sequences: 1807
Number of extensions: 7102
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)