BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD03FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1538 0.0
>3x_Contig1610
Length = 13981
Score = 1538 bits (776), Expect = 0.0
Identities = 830/844 (98%), Gaps = 3/844 (0%)
Strand = Plus / Plus
Query: 85 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 3340
Query: 145 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 3400
Query: 205 aggtgtcttgtgctatggagaacggttcgtgagacacttgatcgagagttcatactcaga 264
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 3460
Query: 265 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 3520
Query: 325 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 3580
Query: 385 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 3640
Query: 445 atttggaaacactagtaagttataataccctttacaaatcgctatgtcagcttccgaggt 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3641 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 3700
Query: 505 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 3760
Query: 565 gacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgtctca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 gacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgtctca 3820
Query: 625 gatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgttgaa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 gatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgttgaa 3880
Query: 685 gaacgaattgatttcgaagaacccaacacaggcccagcagtttgctcaacagttgtctac 744
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct: 3881 gaacgaattgatttcgaagaacccaacaaaggcccagcagtttgctcaacgttggtctac 3940
Query: 745 gcaagtcgatgcagagtctagacatcatattaagcagtttgcgttacaagcgttggttga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3941 gcaagtcgatgcagagtctagacatcatattaagcagtttgcgttacaagcgttggttga 4000
Query: 805 tccagagactactgttgccaacgcttcagctcagttgatcgctgccattgcagatatcga 864
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4001 tccagagactcgtgttgccaacgcttcagctcagttgatcgctgccattgcagagatcga 4060
Query: 865 attgccattgtaatc-atggccagagttgaagaagattatgg-agataataccgctcaag 922
|||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 4061 attgccattg-aatcaatggccagagttgatgaagattatggtagataataccgctcaag 4119
Query: 923 aaca 926
||||
Sbjct: 4120 aaca 4123
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6713
Number of Sequences: 1807
Number of extensions: 6713
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)