BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC25ZD03RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1278                                                        1332   0.0  

>3x_Contig1278 
          Length = 6932

 Score = 1332 bits (672), Expect = 0.0
 Identities = 749/772 (97%), Gaps = 3/772 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   attaccaatgtgcgatgatatt-aaatgctaga-aaatt-acacagctatgagacaactt 103
            |||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||
Sbjct: 4795 attaccaatgtgcgatgagattcaaatgctagacaaattcacacagctatgagacaactt 4854

                                                                        
Query: 104  aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855 aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 4914

                                                                        
Query: 164  gggaagtttggactaccttaaactttattcattaaaatcttaggaaattgttcatgacta 223
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 4915 gggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcaggacta 4974

                                                                        
Query: 224  atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4975 atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 5034

                                                                        
Query: 284  aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5035 aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 5094

                                                                        
Query: 344  atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5095 atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 5154

                                                                        
Query: 404  aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5155 aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 5214

                                                                        
Query: 464  agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 5274

                                                                        
Query: 524  cagcgatggcggcgataccagcaccggcaccgagagtgaccttgccagcgttgttgccgg 583
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 5275 cagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttgccgg 5334

                                                                        
Query: 584  attcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatcaccga 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 attcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatcaccga 5394

                                                                        
Query: 644  tttgagagactggggcaacagtttggacgacgttagaatnctttgatgtcgtttctggag 703
            ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 5395 tttgagagactggggcaacagtttggacgacgttagaatcctttgatgtggtttctggag 5454

                                                                        
Query: 704  cattggtagagttttctggggcagctgangaagtttttggggcagctgangtagtttcag 763
            || |||||| | |||||||||||||||| ||||||| |||||||||||| | ||||||||
Sbjct: 5455 caatggtagtggtttctggggcagctgaggaagtttctggggcagctgaggaagtttcag 5514

                                                                
Query: 764  aactactttctgnagcacctgatgaagaggtagagcaaccgtcaccagagaa 815
            |||||||||||| |||| |||| ||||||| |||| |||||||| |||||||
Sbjct: 5515 aactactttctggagcagctgaggaagaggaagaggaaccgtcagcagagaa 5566


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6165
Number of Sequences: 1807
Number of extensions: 6165
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)