BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD04FM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1530 0.0
>3x_Contig1718
Length = 19496
Score = 1530 bits (772), Expect = 0.0
Identities = 795/800 (99%), Gaps = 2/800 (0%)
Strand = Plus / Plus
Query: 86 catatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13712 catatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggt 13771
Query: 146 tatcatatccacaaacttcttcataattggatatttggcctcatcgataccctcaattgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13772 tatcatatccacaaacttcttcataattggatatttggcctcatcgataccctcaattgg 13831
Query: 206 atcgaaaagcaattgtgaatatacagtgtccattaaacccatactgtcaaatacacgatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13832 atcgaaaagcaattgtgaatatacagtgtccattaaacccatactgtcaaatacacgatt 13891
Query: 266 cacaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggataga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13892 cacaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggataga 13951
Query: 326 atctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13952 atctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcaga 14011
Query: 386 gaatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14012 gaatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagt 14071
Query: 446 ttccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14072 ttccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcact 14131
Query: 506 ggtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14132 ggtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagta 14191
Query: 566 cttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14192 cttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaat 14251
Query: 626 aatgggcaatctcttcaacacggcaacatcttcaagtaagaacgtgtcttcgaaaagcgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14252 aatgggcaatctcttcaacacggcaacatcttcaagtaagaacgtgtcttcgaaaagcgt 14311
Query: 686 tctaaagattatgagaactagctctctagacgcctcattcatctgccatagttctgttag 745
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14312 tctaaagattatgagaactagctctctagacgcttcattcatctgccatagttctgttag 14371
Query: 746 gcatctatccatatcgacccacgattcggctagctgttcctcagtaggttcttccacttt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14372 gcatctatccatatcgacccacgattcggctagctgttcctcagtaggttcttccacttt 14431
Query: 806 caaagcctcaccccaaatccttttcgctatttcgacccaaa-gaaaactagcttctctct 864
||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 14432 caaagcctcaccccagatccttttcgctatttcgacccaaaggaaagctagcttctctct 14491
Query: 865 -atatatcttggatcattcg 883
|||||||||||||||||||
Sbjct: 14492 aatatatcttggatcattcg 14511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5430
Number of Sequences: 1807
Number of extensions: 5430
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)