BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC25ZD04RM1.SCF screened BAC_end
         (890 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1739                                                        1455   0.0  

>3x_Contig1739 
          Length = 22061

 Score = 1455 bits (734), Expect = 0.0
 Identities = 812/832 (97%), Gaps = 5/832 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   ctaatcgctgctaattttaattctgtcaaatgtccttgacatggatttaaatccacccca 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 ctaatcgctgctaattttaattctgtcaaatgtccttgacatggatttaaatccacccca 2812

                                                                        
Query: 108  tgaattctcttcggtggattaggcaaagtggcatagtgcaaaatattatcaccagcactg 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2813 tgaattctcttcggtggattaggcaaagtggcatagtgcaaaatattatcaccagcactg 2872

                                                                        
Query: 168  gtaatagccaaaatggtatcttctggttgaatattaagaatgttaacatcttctctagga 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2873 gtaatagccaaaatggtatcttctggttgaatattaagaatgttaacatcttctctagga 2932

                                                                        
Query: 228  tcttcccatgtgaatgcgtatatataactgttcttaaattggctgtactcagggttcact 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2933 tcttcccatgtgaatgcgtatatataactgttcttaaattggctgtactcagggttcact 2992

                                                                        
Query: 288  tcatcatagtacactctccaatgctccttttgatagaacagagaaggatatggtaaacct 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2993 tcatcatagtacactctccaatgctccttttgatagaacagagaaggatatggtaaacct 3052

                                                                        
Query: 348  tttttagaattttctagtgctgcaatcatagctttggtcattggctgagcgttagaggaa 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3053 tttttagaattttctagtgctgcaatcatagctttggtcattggctgagcgttagaggaa 3112

                                                                        
Query: 408  gctgacgtggttataggtgcgaggtatggagatgttggtgcaagttcaacaaatctagct 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3113 gctgacgtggttataggtgcgaggtatggagatgttggtgcaagttcaacaaatctagct 3172

                                                                        
Query: 468  tgaagatgttgttcgtggtctttattgcaacccaaccaaatgtagtagggaattttacca 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3173 tgaagatgttgttcgtggtctttattgcaacccaaccaaatgtagtagggaattttacca 3232

                                                                        
Query: 528  agcttgtagttataacaattcaatgatttgattgtcccgaatctatattcaagatattct 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 agcttgtagttataacaattcaatgatttgattgtcccgaatctatattcaagatattct 3292

                                                                        
Query: 588  cttctagctggatccaaaaacactttgtcgaattcaaaccac-atctncagaatgtacgg 646
            |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3293 cttctagctggatccaaaaacactttgtcgaattcaaaccacaatctccagaatgtacgg 3352

                                                                        
Query: 647  aatagccaaggtatatgtctgntaactagaaccaccc-aagtgttggttctttcgactag 705
            ||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||
Sbjct: 3353 aatagccaaggtatatgtctgttaactag-accacccaaagtgttggttcttccgactag 3411

                                                                        
Query: 706  catagattcattagtgacacccaaatcaacacacgaaatgataccatccttagccatcaa 765
            ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||   |||
Sbjct: 3412 catagattcattagtgacaccaaaatcaacacacgaaatgataccattcttagcatccaa 3471

                                                                        
Query: 766  taaagatactgcgtgatcaatggccgcatagaaaccttggtatcatgcttcatgaaataa 825
            |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||  | 
Sbjct: 3472 taaagatactgcgtgatcaatggccgcatagaaa-cttggtatcatgctcaatgaataag 3530

                                                                
Query: 826  aaaatgtgatcccctgagctgatttcctctggtatttcaaaatcgcaagcat 877
            |||||||||||  ||||||||| |||||||||||||||||||||||||||||
Sbjct: 3531 aaaatgtgatcaactgagctga-ttcctctggtatttcaaaatcgcaagcat 3581


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6412
Number of Sequences: 1807
Number of extensions: 6412
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)