BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD05RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1526 0.0
>3x_Contig1770
Length = 29267
Score = 1526 bits (770), Expect = 0.0
Identities = 821/834 (98%), Gaps = 3/834 (0%)
Strand = Plus / Minus
Query: 45 gcttatcaattattatagaaagactggagaaacagacagctccagaccaaaattacccgt 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8039 gcttatcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgt 7980
Query: 105 tggtgagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7979 tggtgagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgt 7920
Query: 165 cagtccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7919 cagtccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaa 7860
Query: 225 acatgaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7859 acatgaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaa 7800
Query: 285 cagattctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7799 cagattctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggt 7740
Query: 345 cgaagttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7739 cgaagttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggat 7680
Query: 405 ggttgtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7679 ggttgtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggc 7620
Query: 465 tcgtcatttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7619 tcgtcatttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaa 7560
Query: 525 gtatcaacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttact 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7559 gtatcaacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttact 7500
Query: 585 ggataacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7499 ggataacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccat 7440
Query: 645 gtattatggtcaacagttccaggaagatattgatttctacaacttcgatgagagagctaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7439 gtattatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaa 7380
Query: 705 ggagttggaggagaacttaatattttggaatgctaccaagaatttcttgaatgctacaca 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7379 ggagttggaggagaacttaatattttggaatgctaccaagaatttcttgaatgctacaca 7320
Query: 765 tatgagagcaatgattcaaatacatggacccgggtgatcctactggttgtggaggaagtt 824
||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
Sbjct: 7319 gatgagagcaatgattcaaatacatgga-cctggtgatcctactggttgtgg-tgaaggt 7262
Query: 825 ttttcgtttttgaaaacctttaggaaggtgggggtttgtaaaatccgggtcaaa 878
||||||||||||||||||| || ||||| | ||||||||||||||||| |||||
Sbjct: 7261 ttttcgtttttgaaaacctctatgaagg-gtgggtttgtaaaatccggttcaaa 7209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7041
Number of Sequences: 1807
Number of extensions: 7041
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)