BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD06FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1509 0.0
>3x_Contig1652
Length = 14842
Score = 1509 bits (761), Expect = 0.0
Identities = 810/820 (98%), Gaps = 5/820 (0%)
Strand = Plus / Plus
Query: 86 caatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctctttgtaggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 caatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctctttgtaggt 5378
Query: 146 ttaaaagcttatcaaagctttttttgaggacggtcatttttctgtcacgagatgcacgta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 ttaaaagcttatcaaagctttttttgaggacggtcatttttctgtcacgagatgcacgta 5438
Query: 206 atgatttcctttgcaaccttgacatcttggcaccattttcagtctctttaccatccaacg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 atgatttcctttgcaaccttgacatcttggcaccattttcagtctctttaccatccaacg 5498
Query: 266 cttttttctttgccaataactcgtcacgctgtgcttcgagttgctccagtttcagaagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cttttttctttgccaataactcgtcacgctgtgcttcgagttgctccagtttcagaagaa 5558
Query: 326 tcttacgagtcttagatgagtcatcaagagccattatatcttgtgcaatcttctctaact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 tcttacgagtcttagatgagtcatcaagagccattatatcttgtgcaatcttctctaact 5618
Query: 386 cgccttctatatcagactcatctctgtcgtccactgtatcatctacacttaattcgttat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 cgccttctatatcagactcatctctgtcgtccactgtatcatctacacttaattcgttat 5678
Query: 446 ccgctatttccaaagccgcaatctctttcagtaacaattctcttttttcagtaacttcgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 ccgctatttccaaagccgcaatctctttcagtaacaattctcttttttcagtaacttcgt 5738
Query: 506 cttgaacttgagtcttatattgatttaatgtctctatcaccggctccataactgattgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5739 cttgaacttgagtcttatattgatttaatgtctctatcaccggctccataactgattgca 5798
Query: 566 actgtttcagtgtttcatgttctcgttttccccagctgtcccaccaattagtcatcgaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5799 actgtttcagtgtttcatgttctcgttttccccagctgtcccaccaattagtcatcgaaa 5858
Query: 626 tgagttgttcaggatcttgcaagaatatccagtcattaggagtaaacaaaagaaccttcc 685
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5859 tgagttgttcaggatcttgcaagaatatccagtcattaggagtaaacaaaag-accttcc 5917
Query: 686 ggtgtctcatcaataatttttctttgaagtggcgaaagttcaatgaacgtattgaaaaca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5918 ggtgtctcatcaataatttttctttgaagtggcgaaagttcaatgaacgtattgaaaaca 5977
Query: 746 ccttcttcatttatcaacatgatatctccctctttatcgtagtggaaattacaacctttc 805
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5978 ccttcttcatttatcaacatgatatctccctctttatcgtagtggaaataacaacctttc 6037
Query: 806 tcatcgcgataaacatgggaaaacctg-ttggtggcttgaattttacccaattcgttagc 864
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6038 tcatcgcgataaacat-ggaaaacctgtttggtggcttgaattttacccaattcgttagc 6096
Query: 865 taaa-aaaaccattga-tgtactctntctccgttatcttg 902
|||| ||| ||||||| |||||||| ||||||||||||
Sbjct: 6097 taaagaaatccattgattgtactcttcttccgttatcttg 6136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6992
Number of Sequences: 1807
Number of extensions: 6992
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)