BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD06RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig903 575 e-164
>3x_Contig903
Length = 4000
Score = 575 bits (290), Expect = e-164
Identities = 412/440 (93%), Gaps = 12/440 (2%)
Strand = Plus / Minus
Query: 48 tccctagatt-attaccgacccctgtggttgtcagtaagacaaattgcttcaaaatgtat 106
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2674 tccctagattcattaccgacccctgtggttgtcagtaagacaaattgcttcaaaatgtat 2615
Query: 107 ttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggattgcgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 ttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggattgcgc 2555
Query: 167 ttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgagttgcgtgcataat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 ttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgagttgcgtgcataat 2495
Query: 227 acagttgataccttgcttgtacgagcaagcctttcgaaaaatntcgattggggaaatttc 286
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 2494 acagttgataccttgcttgtacgagcaagcctttcgaaaaat-tcgattggg--aatttc 2438
Query: 287 tcattctt-aataatgttctgatttgctctatctcttctgttggcatctcatcgtatg-a 344
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2437 tcattcttcaataatgttctgatttgctctatctcttctgttggcatctcatcgtatgaa 2378
Query: 345 cccattaccattcttctgaccctctttccc-actgtaacttgcttcattttaatctttgc 403
|| || || || |||||||||||||||||| ||||||||||||| ||| | | || ||||
Sbjct: 2377 ccaataacaatccttctgaccctctttcccaactgtaacttgctccatatcagtc-ttgc 2319
Query: 404 cactactatttcccggcgattggatttgaaaagccaaggt-gtaattttgggaatttttc 462
|||||||||| || |||| |||| |||||||||||| || ||||| |||||||| |||
Sbjct: 2318 cactactatt--cccgcga-tggaattgaaaagccaaagtggtaatattgggaatagttc 2262
Query: 463 aaatgcagggaaagggaaaa 482
||||||| ||||| ||||||
Sbjct: 2261 aaatgcaaggaaaaggaaaa 2242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,757
Number of Sequences: 1807
Number of extensions: 25757
Number of successful extensions: 3218
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)