BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1586 0.0
>3x_Contig1748
Length = 22566
Score = 1586 bits (800), Expect = 0.0
Identities = 832/840 (99%), Gaps = 2/840 (0%)
Strand = Plus / Plus
Query: 87 aattgttctcgagtctaacccttatttttcggtatttccttgattaatacttgactttaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18380 aattgttctcgagtctaacccttatttttcggtatttccttgattaatacttgactttaa 18439
Query: 147 cgaattttgtccttctcatgtttacgtgccgcatagcaatattcttgcctaaatgttagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18440 cgaattttgtccttctcatgtttacgtgccgcatagcaatattcttgcctaaatgttagt 18499
Query: 207 ggatacatctttgttcatgctacctagtggtaagtgaaagaaccagtacatagggaatcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18500 ggatacatctttgttcatgctacctagtggtaagtgaaagaaccagtacatagggaatcc 18559
Query: 267 atcttttaattgcaaattgtgctgtcaaataatggaacattacataatcagttcatggac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18560 atcttttaattgcaaattgtgctgtcaaataatggaacattacataatcagttcatggac 18619
Query: 327 ttgtgatgagcttaggaattttcaaagaggatacaaccacttcctatagcgaaaaagagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18620 ttgtgatgagcttaggaattttcaaagaggatacaaccacttcctatagcgaaaaagagc 18679
Query: 387 actccgataggcaaaattatagacagtacacatgccgacatttaccgggtgttatgatcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18680 actccgataggcaaaattatagacagtacacatgccgacatttaccgggtgttatgatcg 18739
Query: 447 ttcagtctcagacaccagttatcacctcaattatcaccttatggctaggtcttcaggctc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18740 ttcagtctcagacaccagttatcacctcaattatcaccttatggctaggtcttcaggctc 18799
Query: 507 cagacgtgctactctttttttttttcaatctcctgcataaccattaagcgactaggttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18800 cagacgtgctactctttttttttttcaatctcctgcataaccattaagcgactaggttca 18859
Query: 567 tgtagttttgtgttcccacttttgatgtcaaaaaggaaactgaaaacgaattcccagcat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18860 tgtagttttgtgttcccacttttgatgtcaaaaaggaaactgaaaacgaattcccagcat 18919
Query: 627 gcggttcggaaacaacctatcattaattcaagaaaaaaatgaaaataatactacataatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18920 gcggttcggaaacaacctatcattaattcaagaaaaaaatgaaaataatactacataatt 18979
Query: 687 tgacaacgacaaggatagcttttgagaagaatatcccgatctatagttagttagcttact 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18980 tgacaacgacaaggatagcttttgagaagaatatcccgatctatagttagttagcttact 19039
Query: 747 tctactagtcatatggaaaaattgttccatgtatctattttcttgctcgtactattgttc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19040 tctactagtcatatggaaaaattgttccatgtatctattttcttgctcgtactattgttc 19099
Query: 807 tgcctaactaactttaaattggcaactttctgtgctctcgccattcttgttttntttttt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19100 tgcctaactaactttaaattggcaactttctgtgctctcgccattcttgtttt-tttttt 19158
Query: 867 ttctttacccgtttttttaggaatttttagttgattttgaaacaaaggagcttatttaaa 926
||||||||||| ||||||| ||| |||||||||||||||| ||||| |||| || |||||
Sbjct: 19159 ttctttacccg-ttttttaagaaattttagttgattttgagacaaaagagcataattaaa 19217
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,767
Number of Sequences: 1807
Number of extensions: 12767
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)