BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1455 0.0
>3x_Contig1604
Length = 15703
Score = 1455 bits (734), Expect = 0.0
Identities = 873/905 (96%), Gaps = 11/905 (1%)
Strand = Plus / Minus
Query: 45 gcttcttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14480 gcttcttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgct 14421
Query: 105 gtaactattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14420 gtaactattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaat 14361
Query: 165 gaatctgataacttacaaaatattatttccagggatgccggtatctggatttcattatcg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14360 gaatctgataacttacaaaatattatttccagggatgccggtatctggatttcagaatcg 14301
Query: 225 aaagtaagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14300 aaagtaagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccc 14241
Query: 285 tgattgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14240 tgattgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctct 14181
Query: 345 ttcaactgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180 ttcaactgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtg 14121
Query: 405 gtattgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14120 gtattgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaa 14061
Query: 465 gagcttccaggatgcgtgtttgacgaaatgcctct-cgaggactctat-ctcgggcgaat 522
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 14060 gagcttccaggatgcgtgtttgacgaaatgcctctgcgaggactctatgctcgggcgaat 14001
Query: 523 tatgttgttctatgagcggctgttcccaata-tgatgacatgc-tgctccta-tgagtag 579
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 14000 tatgttgttctatgagcggctgttcccaatagtgatgacatgcgtgctcctagtgagtag 13941
Query: 580 aagatccgctcaaatggccctgaagtccttggttatagtgggagcccataccatcaatgt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13940 aagatccgctcaaatggccctgaagtccttggttatagtgggagcccataccatcaatgt 13881
Query: 640 tcccatgtaagctgaagctacctccatgt-gccatgctggagttcatgacattggcggtt 698
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13880 tcccatgtaagctgaagctacctccatgtggccatgctggagttcatgacattggcggtt 13821
Query: 699 gtgccatacaatttggactcgtcagaactaccanaattcatattgccgaaagagttatcc 758
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct: 13820 gtgccatacaatttggactcgtcagaactaccaaaattcagattggcgaaagagttatcc 13761
Query: 759 aaactctgttggttatattcaggttgctacacgataacattgaccttgta-taaaaggtt 817
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 13760 aaactctgttggttatattcaggttgctacacgataacattgacctgttagtaaaaggtt 13701
Query: 818 aattttga-ttagaaaca-ttatagtctcaatttggttggtccatgttt-attaaaaacc 874
|||| ||| ||||||||| |||||||||||||||||||| ||||||||| || |||||
Sbjct: 13700 aattatgagttagaaacatttatagtctcaatttggttgttccatgtttcatagaaaaca 13641
Query: 875 gggacagacaaaaacgtttttgattaaaaatgtttcatgttagccaatcttccattgttt 934
|||||||||| |||| | |||||||||||||| ||||| ||| ||||| |||| ||| |
Sbjct: 13640 gggacagacagaaacagtattgattaaaaatgtgtcatg-taggcaatcctccaatgtat 13582
Query: 935 gcaaa 939
|||||
Sbjct: 13581 gcaaa 13577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7394
Number of Sequences: 1807
Number of extensions: 7394
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)