BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD09FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1538 0.0
>3x_Contig1613
Length = 13977
Score = 1538 bits (776), Expect = 0.0
Identities = 815/824 (98%), Gaps = 3/824 (0%)
Strand = Plus / Minus
Query: 86 tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 2977
Query: 146 ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 2917
Query: 206 ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 2857
Query: 266 atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 2797
Query: 326 ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 2737
Query: 386 ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 2677
Query: 446 ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggggttgtgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggggttgtgacg 2617
Query: 506 aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 2557
Query: 566 ccttgggtggtaagttacctaaaggtgttctattgaccggacctccaggtactggtaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 ccttgggtggtaagttacctaaaggtgttctattgaccggacctccaggtactggtaaga 2497
Query: 626 ctttattggcaagagccaccgccggtgaagctggtgttgactttttcttcatgtcagggt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 ctttattggcaagagccaccgccggtgaagctggtgttgactttttcttcatgtcagggt 2437
Query: 686 cagagtttgacgaagtttatgtaggtgttggtgccaagcgtatcagagagttgtttgcac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 cagagtttgacgaagtttatgtaggtgttggtgccaagcgtatcagagagttgtttgcac 2377
Query: 746 aggcccgcgctcgtgcccctgctattatctttatcgatgaattggatgctatttggagta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2376 aggcccgcgctcgtgcccctgctattatctttatcgatgaattggatgctattggaggta 2317
Query: 806 agcgtaatcccaaagatcaagcttacgcaaaacaaactttgaatcaattgtttggttgaa 865
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2316 agcgtaatcccaaagatcaagcttacgcaaaacaaactttgaatcaattg-ttggttgaa 2258
Query: 866 tgggatggggttttcccaaacaagcggntttaattttcatcggt 909
| |||| |||||||||||||||||||| | ||||| ||||||||
Sbjct: 2257 ttggat-gggttttcccaaacaagcgg-tataattatcatcggt 2216
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5649
Number of Sequences: 1807
Number of extensions: 5649
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)