BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD09RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1558 0.0
>3x_Contig1578
Length = 13178
Score = 1558 bits (786), Expect = 0.0
Identities = 854/872 (97%), Gaps = 5/872 (0%)
Strand = Plus / Minus
Query: 48 atatataggtctatcgtttttgaggcttttgacatattcttgtctgtctttctttttcta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5605 atatataggtctatcgtttttgaggcttttgacatattcttgtctgtctttctttttcta 5546
Query: 108 tcggttgcctcattaccgtgcataaaaaaaaactgatagtgaaatactaactggttacca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5545 tcggttgcctcattaccgtgcataaaaaaaaactgatagtgaaatactaactggttacca 5486
Query: 168 tagaagcttaatatactttacccaatacaatgcactgcgagctggatatttctagctatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5485 tagaagcttaatatactttacccaatacaatgcactgcgagctggatatttctagctatt 5426
Query: 228 tgaaactggacgacctgcaagaatgtggagttaacatggaatggcatggtgaattggcac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5425 tgaaactggacgacctgcaagaatgtggagttaacatggaatggcatggtgaattggcac 5366
Query: 288 tttctgatctcgaagatgatgtaagccttgattttcatgagaagcatgttatcagtcgac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5365 tttctgatctcgaagatgatgtaagccttgattttcatgagaagcatgttatcagtcgac 5306
Query: 348 acgatttacagccaaggtccatccatatgccgtcgatgatccatactcagcctgtccatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5305 acgatttacagccaaggtccatccatatgccgtcgatgatccatactcagcctgtccatt 5246
Query: 408 tgattcacgttcacaatttgaaatttttacagacgagttttgaagaagaagatgaacaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5245 tgattcacgttcacaatttgaaatttttacagacgagttttgaagaagaagatgaacaga 5186
Query: 468 gaattatttgttcttcttctacaccaccttcactggctgacacaagacacagttctgttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5185 gaattatttgttcttcttctacaccaccttcactggctgacacaagacacagttctgttt 5126
Query: 528 tctcttctacaagaagtatcaacgtgttactggaagaagacgagcaagatttggacaatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5125 tctcttctacaagaagtatcaacgtgttactggaagaagacgagcaagatttggacaatg 5066
Query: 588 acttgcagtgcatggctccagtgaagaaaaaacagcaacgtgcattgttggcacccatca 647
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5065 acttgcagtgcatggctccagtgaagaaaaaacagcaacgtgcattggtggcacccatca 5006
Query: 648 tgttctcctcttcatcttcaaagaaagattccgtcgtttcggaaaaggatcagtttg-tt 706
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 5005 tgttctcctcttcatcttcaaagaaagattcggtcgtttcggaaaaggatcagtttgttt 4946
Query: 707 acacgcttactaacaagttactaccttattttgggtatttcttggctgattctaacgatt 766
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4945 acacgctaactaacaagttactaccttattttgggtatttcttggctgattctaacgatt 4886
Query: 767 tggattatttcgataagattagatttccagaaa-tgatttacagttctc--agacgtatt 823
||||||||||||||||||||||||| | ||||| ||||| ||||||| |||||||||
Sbjct: 4885 tggattatttcgataagattagattccaagaaattgattacaagttctccaagacgtatt 4826
Query: 824 tttgatggaacaatnctcatccttttatccagaaattattttttccccttttgctttaaa 883
|||||||||||||| |||||||||||||||||| |||| ||||||||| |||||| || |
Sbjct: 4825 tttgatggaacaatcctcatccttttatccagatatta-tttttccccctttgctataga 4767
Query: 884 ctgcctgtatgatacacctgcatatttttttc 915
||||||||||||||||||||||||||||||||
Sbjct: 4766 ctgcctgtatgatacacctgcatatttttttc 4735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9732
Number of Sequences: 1807
Number of extensions: 9732
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)