BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD10RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1380 0.0
>3x_Contig1278
Length = 6932
Score = 1380 bits (696), Expect = 0.0
Identities = 775/794 (97%), Gaps = 6/794 (0%)
Strand = Plus / Plus
Query: 50 gaagaacca-gattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatacg 108
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gaagaaccaagattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatacg 1711
Query: 109 agcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagatat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 agcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagatat 1771
Query: 169 cacacatgttctagttcgtcaccagactggaaaagtctgttgccggctctgcctgggaac 228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1772 cacacatgttctagttcgtcaccagactggaaaagtctgttgccggcactgcctgggaac 1831
Query: 229 gggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattcg 1891
Query: 289 caagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggg-atagt 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1892 caagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggggatagt 1951
Query: 348 ttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggacc 2011
Query: 408 tcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtgat 2071
Query: 468 ttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 ttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgca 2131
Query: 528 tgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 tgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagaca 2191
Query: 588 ttcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactgac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ttcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactgac 2251
Query: 648 aatctatatacaatggatccgtgttgtgccctgccagactttactgttagcttaggtgct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aatctatatacaatggatccgtgttgtgccctgccagactttactgttagcttaggtgct 2311
Query: 708 atattcgtcatagnggccttagaggtaatgttttttttgtcttttgttgttcaacggctg 767
|||||||||||| |||||||||||||||| ||| || ||| |||||||||||||||| |
Sbjct: 2312 ttattcgtcatagtggccttagaggtaatg-tttcttcgtc-tttgttgttcaacggc-g 2368
Query: 768 ttgtacgggcatctatagccccgccactttatggaattatgccaaaatgttagggcanaa 827
|||||||||||||||||| ||||||||||||||||| || || |||||||||||| ||
Sbjct: 2369 ttgtacgggcatctatag-cccgccactttatggaagtaatgcagaatgttagggcagaa 2427
Query: 828 acctttttaacttt 841
|||| | |||||||
Sbjct: 2428 acctctataacttt 2441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,803
Number of Sequences: 1807
Number of extensions: 13803
Number of successful extensions: 332
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)