BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD11FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1227 1554 0.0
>3x_Contig1227
Length = 6330
Score = 1554 bits (784), Expect = 0.0
Identities = 842/854 (98%), Gaps = 6/854 (0%)
Strand = Plus / Minus
Query: 86 ccgaaaacacaagaactactgagcctagagcaacctttcaccagtggtaacactgtagac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4602 ccgaaaacacaagaactactgagcctagagcaacctttcaccagtggtaacactgtagac 4543
Query: 146 tctaacaacaaacccgcatccttacccaccccaccaagatcaagaaaaaacaacaagctc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4542 tctaacaacaaacccgcatccttacccaccccaccaagatcaagaaaaaacaacaagctc 4483
Query: 206 tatcattcacaacaactaactcctggatgggaatctggctttaaaaggatgctaattcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4482 tatcattcacaacaactaactcctggatgggaatctggctttaaaaggatgctaattcat 4423
Query: 266 acccaaggtgtattttatcaggataccttggtgagtgttttgtttagagtggaaaccaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422 acccaaggtgtattttatcaggataccttggtgagtgttttgtttagagtggaaaccaag 4363
Query: 326 gaagagcaaccatcaacaagcaagatcacattcacatatgtgaacaaatcagattgggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4362 gaagagcaaccatcaacaagcaagatcacattcacatatgtgaacaaatcagattgggaa 4303
Query: 386 attacaggattaagttgtgagattattccacttcgtgcggacaacaacccaccatatgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4302 attacaggattaagttgtgagattattccacttcgtgcggacaacaacccaccatatgtg 4243
Query: 446 ctgcaagtcttgcaatcaccggattcaaagttagcaccgtccaacggcagaacatcatat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4242 ctgcaagtcttgcaatcaccggattcaaagttagcaccgtccaacggcagaacatcatat 4183
Query: 506 acttttgagataacaacaaggttcccattcccacaagaacatgcatctttgttgtcatcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4182 acttttgagataacaacaaggttcccattcccacaagaacatgcatctttgttgtcatcg 4123
Query: 566 caatttaaatgtggcggtcagtactgtagtcacaggctaaaaattggttataccattctc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 caatttaaatgtggcggtcagtactgtagtcacaggctaaaaattggttataccattctc 4063
Query: 626 tctacactatcacctcgtatcagtgagattaagttagcccagttcgttcaacgttggaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 tctacactatcacctcgtatcagtgagattaagttagcccagttcgttcaacgttggaag 4003
Query: 686 tcaatcggtgattctcttggaaaagcgggcgaacatgtagacgttgtcgaatgccaacat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 tcaatcggtgattctcttggaaaagcgggcgaacatgtagacgttgtcgaatgccaacat 3943
Query: 746 acaaatttacaaaaattaatgaaaaccatgtcaaaagttggttttgacgttgtccaacaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 acaaatttacaaaaattaatgaaaaccatgtcaaaagttggttttgacgttgtccaacaa 3883
Query: 806 tcgtcaattccaaacattgcatttgctggtggtattttacatacaaagagtgatgggtac 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3882 tcgtcaattccaaacattgcatttgctggtggtattttacatacaaagagtgatggtaac 3823
Query: 866 taccngatgc-tgcttaagntgaga-tactgggattctgacgat-aggtac-aattacct 921
|| | ||||| |||||||| ||||| |||| ||||||||||||| |||||| ||||||||
Sbjct: 3822 ta-cggatgcttgcttaagttgagattact-ggattctgacgataaggtacaaattacct 3765
Query: 922 gttaaaacacttca 935
|| ||| |||||||
Sbjct: 3764 gtaaaaccacttca 3751
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5771
Number of Sequences: 1807
Number of extensions: 5771
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)