BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD11RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1032 484 e-136
>3x_Contig1032
Length = 3920
Score = 484 bits (244), Expect = e-136
Identities = 247/248 (99%)
Strand = Plus / Minus
Query: 47 aagctttatataacaaaatcaatcctggtatgcttcgtaaaggagaacctaacaacaagg 106
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 aagctttatataacaaaatcaatcccggtatgcttcgtaaaggagaacctaacaacaagg 196
Query: 107 tcaatttctaatcaactacacaccactattagtatatatttataagatttacaacaagta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcaatttctaatcaactacacaccactattagtatatatttataagatttacaacaagta 136
Query: 167 agtaaaccctgtgtgtaactaagacacagtataacacacagtaataataaagagataata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agtaaaccctgtgtgtaactaagacacagtataacacacagtaataataaagagataata 76
Query: 227 gcatgagcagattaaagtacagtgccgttccagggtatttcaccagttttggtgatgaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gcatgagcagattaaagtacagtgccgttccagggtatttcaccagttttggtgatgaaa 16
Query: 287 acgttctg 294
||||||||
Sbjct: 15 acgttctg 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5697
Number of Sequences: 1807
Number of extensions: 5697
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)