BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZD12RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1532 0.0
>3x_Contig1313
Length = 8010
Score = 1532 bits (773), Expect = 0.0
Identities = 847/864 (98%), Gaps = 6/864 (0%)
Strand = Plus / Plus
Query: 45 gcttgattacattctttttattatttttaatgtgttcttagaatttcccaatgtagacct 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2717 gcttgattacattctttttattatatttaatgtgttcttagaatttcccaatgtagacct 2776
Query: 105 ctctctattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 ctctctattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaa 2836
Query: 165 tcccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaatctcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2837 tcccaaacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcg 2896
Query: 225 gcaagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 gcaagtatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgt 2956
Query: 285 taagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccact 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 taagaaaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccact 3016
Query: 345 agtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 agtgataccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgca 3076
Query: 405 tggactcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 tggactcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggca 3136
Query: 465 cctgatgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 cctgatgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagt 3196
Query: 525 tcaatcaacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 tcaatcaacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctg 3256
Query: 585 cagctcgttaaggaaaaagtagatatcagacctgnattacaggagctgatgcagcagtat 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3257 cagctcgttaaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtat 3316
Query: 645 aacaagacgtacgtgctttcgttgaactggt-caaggacctcatacacgacctaacgggt 703
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3317 aacaagacgtacgtgctttcgttgaactggtccaaggacctcatacacgacctaacgggt 3376
Query: 704 attttccaatc-gatatctactgtaacgaa-taaaatcacgtgatggggaagtttacagc 761
|||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3377 atttccaaatcggatatctactgtaacgaattaaaatcacgtgatggggaagtttacagc 3436
Query: 762 ggacaatttacaaagcaaatattgaccggttgggacaagtaccagatgttgaaagagatt 821
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3437 ggacaatttacaaagcaaatattgaccggttgggacaagtacgagatgttgaaagagatt 3496
Query: 822 tgcgatttagaccaagtgcagaggggaccagagc-ttacttatattggaaatag-tttgg 879
|||||||||||| ||||||| ||||||||||||| | |||||||||||| |||| |||||
Sbjct: 3497 tgcgatttagacaaagtgca-aggggaccagagcataacttatattggagatagttttgg 3555
Query: 880 cgatttgccttttattttggcaaa 903
||||||||||| |||| |||||||
Sbjct: 3556 cgatttgccttgtattctggcaaa 3579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7671
Number of Sequences: 1807
Number of extensions: 7671
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)