BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE01FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1499 0.0
3x_Contig26 107 4e-23
>3x_Contig1536
Length = 11572
Score = 1499 bits (756), Expect = 0.0
Identities = 817/835 (97%), Gaps = 3/835 (0%)
Strand = Plus / Minus
Query: 86 cttattagcttctgatacttcctgcaatgtagatcctggaacgacgctccaatctatcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6235 cttattagcttctgatacttcctgcaatgtagatcctggaacgacgctccaatctatcat 6176
Query: 146 tggttctttgttctcaaataagtaatcgtttataatcttgaaatgtttattgccgaagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 tggttctttgttctcaaataagtaatcgtttataatcttgaaatgtttattgccgaagaa 6116
Query: 206 ccctcttgacgcagacagcggcgatggatgtacagactttagaactttgaaattcgatgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 ccctcttgacgcagacagcggcgatggatgtacagactttagaactttgaaattcgatgg 6056
Query: 266 caagtgccttttttccccttcaatcagcttgatagcattgttgccccaaagtaggaaaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 caagtgccttttttccccttcaatcagcttgatagcattgttgccccaaagtaggaaaac 5996
Query: 326 gattggtttaccgtttttcattctgtcttcaattagtagatcaatggctcttttagtgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 gattggtttaccgtttttcattctgtcttcaattagtagatcaatggctcttttagtgaa 5936
Query: 386 ttgttcccaacctctcttggagtgagaattagcagagtgtgctttgactgttaaactggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 ttgttcccaacctctcttggagtgagaattagcagagtgtgctttgactgttaaactggt 5876
Query: 446 attaagtaataagacaccttgcttactccacgatgaaagatctccatatgaataattaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 attaagtaataagacaccttgcttactccacgatgaaagatctccatatgaataattaac 5816
Query: 506 tttgaaatcggagtaattgttcaattgtaattctttgtatatattcttaagagacggagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tttgaaatcggagtaattgttcaattgtaattctttgtatatattcttaagagacggagg 5756
Query: 566 agctggcgtcgggcttcgtacgctaaaagccaatccatgagcttggttaaaattatgata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 agctggcgtcgggcttcgtacgctaaaagccaatccatgagcttggttaaaattatgata 5696
Query: 626 gggatcctggccaataatcacaactcgaacatcatcganatgcgttaagcgagtccacga 685
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5695 gggatcctggccaataatcacaactcgaacatcatcgaaatgcgttaagcgagtccacga 5636
Query: 686 gtagatatccttcggtgatgggaaaaccgtgnncattttctgttcgttcacaacaaattc 745
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5635 gtagatatccttcggtgatgggaaaaccgtgcaatttttctgttcgttcacaacaaattc 5576
Query: 746 cttcagtttaaagaaatacngtttcgagaactcttgctttaaccgtcttagccaggaaat 805
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 5575 cttcagtttaaggaaatacggtttcgagaactcttgctttaaccgtctcagccaggaaat 5516
Query: 806 gtcaattgtatccatttctaaatccagtaaacacttcttttcctccagtacaaactgtta 865
||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||| ||
Sbjct: 5515 gtcaattgtctccatttctcactccagtaaacacttcttttcctcaggtacaaactg-ta 5457
Query: 866 aaatagcgttctttcaccttattcttatcagnatctttcttctggtagatctgtc 920
||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 5456 aaatagcgttc-ttcaacttattcttatcagtatc-ttcttctggtagatctgtc 5404
>3x_Contig26
Length = 1046
Score = 107 bits (54), Expect = 4e-23
Identities = 135/161 (83%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 554 aagagacggaggagctggcgtcgggcttcgtacgctaaaagccaatccatgagcttggtt 613
||||||||||||||| |||| ||||| ||| |||| ||||||||| |||||||| ||
Sbjct: 267 aagagacggaggagcgggcgacgggcgtcggacgcgaaaagccaagccatgagcgggggg 208
Query: 614 aaaattatgatagggatcctggccaataatcacaactcgaacatcatcganatgcgttaa 673
|||| | || ||||| || |||||| ||||||||||||||||||| ||| | |||||||
Sbjct: 207 aaaaggaggaaagggagccaggccaagaatcacaactcgaacatcagcgaaaggcgttaa 148
Query: 674 gcgagtccacgagtagatatccttcggtgatgggaaaaccg 714
||||| ||||||| ||||| | |||| |||||||||||||
Sbjct: 147 gcgagcccacgaggagata-gcgtcggggatgggaaaaccg 108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5873
Number of Sequences: 1807
Number of extensions: 5873
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)