BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE01RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 1513 0.0
>3x_Contig1701
Length = 10926
Score = 1513 bits (763), Expect = 0.0
Identities = 844/863 (97%), Gaps = 6/863 (0%)
Strand = Plus / Minus
Query: 48 ctgcttgtgttggtaaactgctcaactatacaaaagacttttttttgtatgaaattctat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ctgcttgtgttggtaaactgctcaactatacaaaagacttttttttgtatgaaattctat 1042
Query: 108 gcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagtaaaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagtaaaat 982
Query: 168 atagaggcgtagaaaagcatatagaaggtgcgaagtgttgttggcgccccagtttcgcct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 atagaggcgtagaaaagcatatagaaggtgcgaagtgttgttggcgccccagtttcgcct 922
Query: 228 gtggacactgtgaacaattttaagatgacggtaaaaaaaaaagatgaaaataaaacacga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtggacactgtgaacaattttaagatgacggtaaaaaaaaaagatgaaaataaaacacga 862
Query: 288 aaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtggataa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtggataa 802
Query: 348 gatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaagttcgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaagttcgc 742
Query: 408 ggacttcgctttatttacgggatgctattaaacagcaatataactaacccaattatcaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacttcgctttatttacgggatgctattaaacagcaatataactaacccaattatcaag 682
Query: 468 gcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtttcaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtttcaca 622
Query: 528 taagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtatgtggg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtatgtggg 562
Query: 588 atcacaccccattttttaagccacatggagtatttatttggtacaatatccgtctcattt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcacaccccattttttaagccacatggagtatttatttggtacaatatccgtctcattt 502
Query: 648 gcagtttccctttcacactttgcaataaatttgttcctgcctcttaccagtaaaatcaaa 707
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gcagtttccctttcacactttgcaataaatttgttcctgcctctaaccagtaaaatcaaa 442
Query: 708 ctaggaatagcatatgacacaattaaaagcgtcactgcagcagatacgatagcattgaaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggaatagcatatgacacaattaaaagcgtcactgcagcagatacgatagcattgaaa 382
Query: 768 gcctttatactgccc-acataatgcatccaatgatcacga-ttgtgcttgtgaagag-ag 824
||||| |||||||| |||||||||||||||||||||||| | |||||||||| || ||
Sbjct: 381 gccttagtactgcccaacataatgcatccaatgatcacgactagtgcttgtgagaagaag 322
Query: 825 tgcgcttataaggcaactttgttgacgg-attgattgttgcaaacctagctgttac-aat 882
||||| ||||| | |||||||||||||| || ||| |||||||||||||||||||| |||
Sbjct: 321 tgcgcatataaaggaactttgttgacggaatcgatagttgcaaacctagctgttacaaat 262
Query: 883 cggga-aagattccatttggcct 904
| ||| |||||||||| ||||||
Sbjct: 261 ccggataagattccatctggcct 239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7258
Number of Sequences: 1807
Number of extensions: 7258
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)