BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE03RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig268 1382 0.0
3x_Contig1597 325 9e-89
>3x_Contig268
Length = 1951
Score = 1382 bits (697), Expect = 0.0
Identities = 731/742 (98%), Gaps = 1/742 (0%)
Strand = Plus / Minus
Query: 193 gttttattttgtaatgtgaactactgttttgtaggataaaagaactgaaagtgcgttgtc 252
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1951 gttttattttgtaatgtgaactactgtaatgtaggataaaagaactgaaagtgcgttgtc 1892
Query: 253 caaaaggaaaagagtctcacattttaatgatacaataaaatactgttccgtcgcgcagtt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 caaaaggaaaagagtctcacattttaatgatacaataaaatactgttccgtcgcgcagtt 1832
Query: 313 aattacaggaatcgaggagggaggaaagaacaacgggaaggtttggtgtttatcaaatta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 aattacaggaatcgaggagggaggaaagaacaacgggaaggtttggtgtttatcaaatta 1772
Query: 373 aaagtattgtggaattgaggtacaatgagcggaattgtattaatactgcaaacataattt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 aaagtattgtggaattgaggtacaatgagcggaattgtattaatactgcaaacataattt 1712
Query: 433 gactccagaacaaactgaaattctaaatgaaagaaacagtgaaaaagtaaaggaggattg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 gactccagaacaaactgaaattctaaatgaaagaaacagtgaaaaagtaaaggaggattg 1652
Query: 493 gaatttacacagctagcagtgtgaccacaagtgtaaagggaatctaaatccaagcggtgt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 gaatttacacagctagcagtgtgaccacaagtgtaaagggaatctaaatccaagcggtgt 1592
Query: 553 gcagggaagttaaattaactttatgcttagctattcacatttcactgtattatcattgcc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 gcagggaagttaaattaactttatgcttagctattcacatttcactgtattatcattgcc 1532
Query: 613 aattcaggaagttgaaatcattatagctattattcggatctaagaaatccaaattgaaac 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 aattcaggaagttgaaatcattatagctattattcggatctaagaaatccaaattgaaac 1472
Query: 673 cgctttgatctaatttcattttctcgctgttcttctcgtctttcgcaaattcatcgttag 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 cgctttgatctaatttcattttctcgctgttcttctcgtctttcgcaaattcatcgttag 1412
Query: 733 aatcgccctgtgtatcgnctttcttcgcgagagaggcagtttctaaagtgcccaacattg 792
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 aatcgccctgtgtatcgcctttcttcgcgagagaggcagtttctaaagtgcccaacattg 1352
Query: 793 aatcctcattgtcagcataatcaaatgcagcagaagcgttcagagcaggatctatactca 852
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1351 aatcctcattgtcagcataatcaaatgcagcagaggcgttcagagcaggatctatactca 1292
Query: 853 taggatcgaagtcagtatgttggggttggatcggtcaaagcataatgcnngcacattcca 912
||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||
Sbjct: 1291 taggatcgaagtcagtatg-tggggttggatcggtcaaagcattatgcggcaacaatcca 1233
Query: 913 aggctattattactgccaggat 934
||||||||||||||||||||||
Sbjct: 1232 aggctattattactgccaggat 1211
>3x_Contig1597
Length = 14240
Score = 325 bits (164), Expect = 9e-89
Identities = 174/176 (98%), Gaps = 1/176 (0%)
Strand = Plus / Minus
Query: 44 gcttgagctgagatgtccaagtattattatgaacgattagtgatagttctatattaaaat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 186 gcttgagctgagatgtccaagtatcattatgaacgattagtgatagttctatattaaaat 127
Query: 104 gacatcgttatctaaaggtaaactaaatagccaaattggttctggcatatcatcaagaac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gacatcgttatctaaaggtaaactaaatagccaaattggttctggcatatcatcaagaac 67
Query: 164 gtattcgaaaagttattatgatacatacagttttattttgtaatgtgaactactgt 219
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 66 gtattcgaaaagttattatgatacatacagttttattttgtaatgt-aactactgt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7198
Number of Sequences: 1807
Number of extensions: 7198
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)