BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE04FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig942 914 0.0
3x_Contig508 410 e-114
>3x_Contig942
Length = 3614
Score = 914 bits (461), Expect = 0.0
Identities = 554/575 (96%), Gaps = 8/575 (1%)
Strand = Plus / Plus
Query: 325 ccaataggtccaagttaccaatagcttctattgtatcttctctcttctcaccaggaggat 384
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 4 ccaataggtccaagttaccaataggttatattgtatcttctctcttctcaccaggaggat 63
Query: 385 gtgtaattgatgatacaacgaaagtattgcttgca-gtgtaataaataccctccaccaat 443
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 64 gtgtaattgatgatacaacgaaagtattgcttgcaagtgtaataaataccctcgacgaat 123
Query: 444 acaatacatccaggaacataataagttcccttcgttggtatagcttgctgaaggtgcaat 503
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acaatacatccaggaaaataataagttcccttcgttggtatagcttgctgaaggtgcaat 183
Query: 504 tcaa-tgctaccgctggggtcttctaaactccaattccccttggaattctgatccagtag 562
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaaatgctagcgctggggtcttctaaactccaattccccttggaattctgatccagtag 243
Query: 563 tccaagcaatagaaagttcttaccatcatgccctagtaagttttttatttgcgttatctt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccaagcaatagaaagttcttaccatcatgccctagtaagttttttatttgcgttatctt 303
Query: 623 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 363
Query: 683 tataatagaagataaaggattgaatatgtcattattctgaaatntttcgtttctaagtac 742
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 364 tataatagaagataaaggattgaatatgtcattattctgaaatttttcgtttctaagtac 423
Query: 743 cttgtcttttattatgtgatatcgtgtcgtaaataggg-aactttgnactc-acatttag 800
|||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||| |
Sbjct: 424 cttgtcttttataatgtgatatcgtgtcgtaaatagggaaactttggactcaacattagg 483
Query: 801 aagttt-agttttgcgatcgaaagcatg-ttttttcaacctcttta-gtcgaggtacgta 857
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 484 aagtttaagttttgcgatcgaaagcatgtttttttcaacctctttaggtcgaggtacgta 543
Query: 858 tatgtactgtccttttcgtatgggcatacctgaaa 892
|||||||||| |||||||||||| ||||| |||||
Sbjct: 544 tatgtactgt-cttttcgtatggtcatacgtgaaa 577
>3x_Contig508
Length = 2437
Score = 410 bits (207), Expect = e-114
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 88 gatgaaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 gatgaaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgttg 2290
Query: 148 ttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 ttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgt 2350
Query: 208 cccctccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 cccctccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgta 2410
Query: 268 tttttaaatctttatctaaccttgcca 294
|||||||||||||||||||||||||||
Sbjct: 2411 tttttaaatctttatctaaccttgcca 2437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5979
Number of Sequences: 1807
Number of extensions: 5979
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)