BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1400 0.0
>3x_Contig1668
Length = 13429
Score = 1400 bits (706), Expect = 0.0
Identities = 814/839 (97%), Gaps = 9/839 (1%)
Strand = Plus / Minus
Query: 46 gcttaagaattttt-aatacacatttctagcgtcttcgttccaccaacatgatctacaat 104
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1739 gcttaagaatttttcaatacacatctctagcgtcttcgttccaccaacatgatctacaat 1680
Query: 105 cttgtcccatttgtcttcatacatttctaaaccttctaataataataaaagctcttggtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 cttgtcccatttgtcttcatacatttctaaaccttctaataataataaaagctcttggtc 1620
Query: 165 ggtccaggaactgttgcttaccgtactgttttcggtcaacttgataaaatctgatgattg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1619 ggtccaggaactgttgcttaccgtactgttttcggtcaacttgataaaatctgatgagtg 1560
Query: 225 aaaattcgcaccgaagtgaccttcttggaagcagcgcgaacagatgttgacatttttgga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 aaaattcgcaccgaagtgaccttcttggaagcagcgcgaacagatgttgacatttttgga 1500
Query: 285 tcttagattatggtagcgaattgtagtggcatcgttaccacaactgaagcatacgtattg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 tcttagattatggtagcgaattgtagtggcatcgttaccacaactgaagcatacgtattg 1440
Query: 345 tttattgatttgccttgcttgtaaattgagttgacgtaaagcattgaagtcatggattgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 tttattgatttgccttgcttgtaaattgagttgacgtaaagcattgaagtcatggattgt 1380
Query: 405 atcatagacattttttcttaaagaaagattgactgggaatggctctggacgtttgaattc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 atcatagacattttttcttaaagaaagattgactgggaatggctctggacgtttgaattc 1320
Query: 465 caatttcttttcctctttgttatcatctgcagactccgctgtggcattcgcagcatcatc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 caatttcttttcctctttgttatcatctgcagactccgctgtggcattcgcagcatcatc 1260
Query: 525 tgctactgcaggcgttgatcctacgggagtcgtttcggcctcagtaacctctggtggtac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 tgctactgcaggcgttgatcctacgggagtcgtttcggcctcagtaacctctggtggtac 1200
Query: 585 gaacggtttcaaaccttgaggtgtatcaagtaccacctgnaaatganccgtaaaactann 644
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 1199 gaacggtttcaaaccttgaggtgtatcaagtaccacctggaaatgaccggtaaaacta-g 1141
Query: 645 gaccaac-agtgatggtttagatcttggatctatttgataattaattagaccccatttct 703
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 gaccaacaagtgatggtttagatcttggatctatttgataattaattagaccccatttct 1081
Query: 704 ccaaaaactgatgaaattttcaaacagatgccacatccattagcatatttttttctgatg 763
||||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||||
Sbjct: 1080 ccaaaaactgatgaattttcaaaacagatgccacatcca-tagcaatatttcttctgatg 1022
Query: 764 gcagtcactgtcaagtatttcataaggagacaacctatatgtgggttatcataaaattcc 823
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1021 gcagtcactgtcaagta-ttcataaggagacaacctatatgt-gtttatcataaaattcc 964
Query: 824 taacaatccttatacgcctttggaagttttgaaacaagacgaattcgttgaaaaaactt 882
|||| |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||
Sbjct: 963 taac-atccttatacgcctttgg-agtcttgaaacgagacg-attcgttgaaaaaactt 908
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8808
Number of Sequences: 1807
Number of extensions: 8808
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)