BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE05FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1494 1516 0.0
>3x_Contig1494
Length = 10561
Score = 1516 bits (765), Expect = 0.0
Identities = 799/805 (99%), Gaps = 4/805 (0%)
Strand = Plus / Minus
Query: 86 cactagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8853 cactagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacact 8794
Query: 146 caggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8793 caggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaa 8734
Query: 206 ctgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8733 ctgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactt 8674
Query: 266 agtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8673 agtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaa 8614
Query: 326 aaacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8613 aaacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaacc 8554
Query: 386 cttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8553 cttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaa 8494
Query: 446 tcccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8493 tcccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataata 8434
Query: 506 atgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8433 atgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatc 8374
Query: 566 gccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatcctta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8373 gccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatcctta 8314
Query: 626 gtttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8313 gtttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatct 8254
Query: 686 acgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaatta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8253 acgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaatta 8194
Query: 746 cactccagacgtattaccacggnatttcgagttgtcctcaaaggatgttaacaatcgcag 805
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 8193 cactccagacgtattaccacgg-atttcgagttgtcctcaaagaatgttaacaatcgcag 8135
Query: 806 caatagagcaagcattgaagtattactggatttgcttctatcatttgaag-agagaacgg 864
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 8134 caatagagcaagcattgaagtattactgtatttgcttctatcatttgaagaagagaacgg 8075
Query: 865 -ttttaaaataaa-ggtccatccgt 887
|||||||||||| |||||||||||
Sbjct: 8074 tttttaaaataaagggtccatccgt 8050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8011
Number of Sequences: 1807
Number of extensions: 8011
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)