BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE06FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1481 0.0
>3x_Contig1487
Length = 9002
Score = 1481 bits (747), Expect = 0.0
Identities = 810/826 (98%), Gaps = 5/826 (0%)
Strand = Plus / Plus
Query: 87 aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 1083
Query: 147 tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 1143
Query: 207 cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 1203
Query: 267 tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 1263
Query: 327 tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 1323
Query: 387 tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 1383
Query: 447 cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 1443
Query: 507 gaagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gaagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 1503
Query: 567 gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 1563
Query: 627 tcacagagccttcaaagcttgaatacagtatcctcaggggtgttacaaaacagtttacaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 tcacagagccttcaaagcttgaatacagtatcctcaggggtgttacaaaacagtttacaa 1623
Query: 687 gcgttgagtactagatatgaggcgataattgacgatttggatgattcagataatataaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 gcgttgagtactagatatgaggcgataattgacgatttggatgattcagataatataaag 1683
Query: 747 atcgagaagctatactcgttaccgaaggtgtcaacacctattgacgtttatatttcgatt 806
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1684 atcgagaagctatactcgttaccgaaggtgtcaacacctattgacgttaatattcgaatt 1743
Query: 807 cttaag-aggctacg-aaccctgcgaagagaaactggagg-agagtccatattaaag--a 861
|||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1744 cttaagaaggctacgaaaccctgcgaagagaaacctgaggaagagtccatattaaaggag 1803
Query: 862 tatacttccggggattttatcacgggttttgttgttatagagaata 907
||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 1804 tatacttccggggatattatcaacgggtttgttgttatagagaata 1849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5382
Number of Sequences: 1807
Number of extensions: 5382
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)