BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE07FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1405 0.0
>3x_Contig1669
Length = 15503
Score = 1405 bits (709), Expect = 0.0
Identities = 808/833 (96%), Gaps = 8/833 (0%)
Strand = Plus / Plus
Query: 86 taattcagaagaaatatgtcatgcctccattttttaccaaacatgaacggaatctagtat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9424 taattcagaagaaatatgtcatgcctccattttttaccaaacatgaacggaatctagtat 9483
Query: 146 gggcctcattcgtactaggaagtataggtgaattggctttgcttatgtgcactatcttct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484 gggcctcattcgtactaggaagtataggtgaattggctttgcttatgtgcactatcttct 9543
Query: 206 caacaaacacgtatcctagggtgcacagttccatggtgggtatattctgtgcatttgtcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9544 caacaaacacgtatcctagggtgcacagttccatggtgggtatattctgtgcatttgtcg 9603
Query: 266 gattgagtgtaatttgtcatgtcgcacaatatatgacaatgggcagacactacgctgtcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9604 gattgagtgtaatttgtcatgtcgcacaatatatgacaatgggcagacactacgctgtcg 9663
Query: 326 tccatcctcttacaagtagtgaagatatcggcaaagacacaaggtggaatgaatggcacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9664 tccatcctcttacaagtagtgaagatatcggcaaagacacaaggtggaatgaatggcacg 9723
Query: 386 gccatgtttggaacaagtatactatcagtggcttactaaaggcattttgggtaatagctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9724 gccatgtttggaacaagtatactatcagtggcttactaaaggcattttgggtaatagctg 9783
Query: 446 ctttcgtttgggctatttgttttgcatgcttagaagatagatcaacgactgcctgttttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9784 ctttcgtttgggctatttgttttgcatgcttagaagatagatcaacgactgcctgttttg 9843
Query: 506 aatggctattggcattttggttcggaatatatttcattattgtctctgttgactggtata 565
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9844 aatggctattggcattttggttcggattatatttcattattgtctctgttgactggtata 9903
Query: 566 ttggcggaagatatacccagtccaagtatttccatcaaatcacaattacggagaaattga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9904 ttggcggaagatatacccagtccaagtatttccatcaaatcacaattacggagaatttga 9963
Query: 626 actattttacagtac-atcagntgaacgcactataactcacttagtttctcaagaaa-ta 683
|||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 9964 actattaca-agtacaatcagttgaacgcactataactcacttagtttctcaagaaatta 10022
Query: 684 ttaatgaagnttgtaatataaactactcggaaggatattctgaaatatagcataatgata 743
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10023 ttaatgaagttgtaaatataaactactcggaaggatattctgaaatatagcataatgata 10082
Query: 744 atactagttagaactttac-aaaaatagagtntattatagatagaaataacag-acagaa 801
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 10083 atactagttagaactttacaaaaaatagagtatattatagatagaataaacagaacagaa 10142
Query: 802 taaattaccaggcttctgggaatttt--aaagtgttattagatagag-aaaaaattaagt 858
|||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||
Sbjct: 10143 taaattaccaggcttctgggaattttaaaaagtgttatgagatagagaaaaaaataaagt 10202
Query: 859 tcatagtgatacttaacgttttgttactttgaaatggcttcaaataatgaaga 911
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 10203 tcatagtgatacataacggtttgttactttgaaatggcttcaaattatgaaga 10255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6036
Number of Sequences: 1807
Number of extensions: 6036
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)