BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE08FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1695 1491 0.0
>3x_Contig1695
Length = 14630
Score = 1491 bits (752), Expect = 0.0
Identities = 793/803 (98%), Gaps = 3/803 (0%)
Strand = Plus / Minus
Query: 88 tttgaacctctactttaaaggtattggtatggatctgaaagatttgaatgggcaagtgga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10989 tttgaacctctactttaaaggtattggtatggatctgaaagatttgaatgggcaagtgga 10930
Query: 148 aatatcgaattttgtacatgggaaattcaaggacgaggctaatgccttgaacgaaactgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10929 aatatcgaattttgtacatgggaaattcaaggacgaggctaatgccttgaacgaaactgt 10870
Query: 208 gctaaaggttaaacagcagttcatgaaagaattggaagaaaaagagcttttgagttctaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10869 gctaaaggttaaacagcagttcatgaaagaattggaagaaaaagagcttttgagttctaa 10810
Query: 268 acattcagagttcttcgtgcaagatgttgatatattaaatttgttaccttcgagcaacaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10809 acattcagagttcttcgtgcaagatgttgatatattaaatttgttaccttcgagcaacaa 10750
Query: 328 atctaacaaatatgtgcccagttggttgccagaactaccgcctgatcatacgtacaaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10749 atctaacaaatatgtgcccagttggttgccagaactaccgcctgatcatacgtacaaatt 10690
Query: 388 tacctcgttgtacaagagacccattacagatgagaggctgatgaagaagaagttactaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10689 tacctcgttgtacaagagacccattacagatgagaggctgatgaagaagaagttactaga 10630
Query: 448 agaaggaaggctttcggaaaaggcattgttgaatatgcttagtcaagttgtcaatcagga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10629 agaaggaaggctttcggaaaaggcattgttgaatatgcttagtcaagttgtcaatcagga 10570
Query: 508 cccactggtagcgctaaataaagatagcgaccagtctgccaacaatgctgccctttctga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10569 cccactggtagcgctaaataaagatagcgaccagtctgccaacaatgctgccctttctga 10510
Query: 568 acatattaaagaaagtcagttagaaaccgatttaatctttgaccctcataaaaccatacc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10509 acatattaaagaaagtcagttagaaaccgatttaatctttgaccctcataaaaccatacc 10450
Query: 628 tacagataaagaatggggtacaacaacggtccttcatggcatcgagtcattcaatctttc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10449 tacagataaagaatggggtacaacaacggtccttcatggcatcgagtcattcaatctttc 10390
Query: 688 gccagtgaagaatttcaatgtgttagaatactgtaagaagagagatgcaatagtaaaacg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10389 gccagtgaagaatttcaatgtgttagaatactgtaagaagagagatgcaatagtaaaacg 10330
Query: 748 aagggctgnaagggcagaaaaccaagtatcgaaatagagacgtaacccattcattacga- 806
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 10329 aagggctgaaagggcagaaaaccaagtatcgaataagagacgtaacccattca-tacgag 10271
Query: 807 gtgccatgatctgttcaccctacggtcaaaggagtaccaaattgaggaagtcagtttgaa 866
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct: 10270 gtgccatgatctgttcaccctacggtcaagggagtaccaaatcgaggaagtcagttgaaa 10211
Query: 867 atcaattgaaaac-atgctaagg 888
||||||||||||| |||||||||
Sbjct: 10210 atcaattgaaaacaatgctaagg 10188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6791
Number of Sequences: 1807
Number of extensions: 6791
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)