BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE08RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1536 0.0
>3x_Contig1301
Length = 6951
Score = 1536 bits (775), Expect = 0.0
Identities = 834/848 (98%), Gaps = 6/848 (0%)
Strand = Plus / Minus
Query: 49 atttggatactcatttttttaggaataatcatcaagaaattctaaatgtacacgcagata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 atttggatactcatttttttaggaataatcatcaagaaattctaaatgtacacgcagata 4610
Query: 109 aaacatatcaccagttgaatctttcatcgaagcatttaatgagcaaaatcacaaatataa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 aaacatatcaccagttgaatctttcatcgaagcatttaatgagcaaaatcacaaatataa 4550
Query: 169 tcagtgatcatgtcgaacaaaacagaacattattgatggatacattgaatactgccacca 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4549 tcagtgatcatgtcgaacaaaacagaacattattgatggatacattgaagactgccacca 4490
Query: 229 ccgaagtcattactcaagagatgtctcatttcgaaccagtcaggaaaacatgggaacagt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ccgaagtcattactcaagagatgtctcatttcgaaccagtcaggaaaacatgggaacagt 4430
Query: 289 cattcaatcacattaatgtatgtgattctttgagcaataaattcaaagatgatacaacag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 cattcaatcacattaatgtatgtgattctttgagcaataaattcaaagatgatacaacag 4370
Query: 349 aatctttgaatagcttgaaatctcatatggaaagtacagtacgtgaaagttctctaattg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 aatctttgaatagcttgaaatctcatatggaaagtacagtacgtgaaagttctctaattg 4310
Query: 409 cagacaagattaaagataatctttgtcatttccaagatagaaatgatatcgcaaacatga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 cagacaagattaaagataatctttgtcatttccaagatagaaatgatatcgcaaacatga 4250
Query: 469 ctacaaacattaacggtactgtggatgatattaaaaacaagcatagtgttttacgtgatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 ctacaaacattaacggtactgtggatgatattaaaaacaagcatagtgttttacgtgatg 4190
Query: 529 agttggaaaaaaatgtctcatttattcacgcctcaagtgaaggttntaaagctatagata 588
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4189 agttggaaaaaaatgtctcatttattcacgcctcaagtgaaggttttaaagctatagata 4130
Query: 589 gctctctgaaacgtataatgaatttccgtatgcccgaggggaaaacagaaactttagcag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 gctctctgaaacgtataatgaatttccgtatgcccgaggggaaaacagaaactttagcag 4070
Query: 649 atgatttgataaagcatattgattcaagttctgtggccccagtcgcgtcttctgggaaaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 atgatttgataaagcatattgattcaagttctgtggccccagtcgcgtcttctgggaaaa 4010
Query: 709 cgccgttgagaccacttctcaaatctgaaacaaagcagagatcactatcgaaatcagttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4009 cgccgttgagaccacttctcaaatctgaaacaaagcagagatcactatcgaaatcagttt 3950
Query: 769 ctcctgcanaaagttcacatgccaccattataaactctccatttaaagaggaagtcatta 828
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 3949 ctcctgcaaaaagttcacatgccaccattataaactctcca-ttaaagaggaagtcatca 3891
Query: 829 gaactcaaggatatttttctggggattagtaaaaaacaac-gtaagtccacc-aaaattc 886
| ||||||| ||||||| |||| |||||||||||||| ||||||||||| |||||||
Sbjct: 3890 g-actcaag--aatttttcctgggaatagtaaaaaacaacggtaagtccaccaaaaattc 3834
Query: 887 tcctatta 894
||||||||
Sbjct: 3833 tcctatta 3826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7369
Number of Sequences: 1807
Number of extensions: 7369
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)