BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE10RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1241 0.0
>3x_Contig1788
Length = 28493
Score = 1241 bits (626), Expect = 0.0
Identities = 657/665 (98%), Gaps = 2/665 (0%)
Strand = Plus / Minus
Query: 48 caagaataattaatgatattatatagactgtaccttattagacaccttagcctttaatat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15676 caagaataattaatgatattatatagactgtaccttattagacaccttagcctttaatat 15617
Query: 108 tatagtaaagatgtcgttgatctattttgtattcaggtatgtaactatagtatctttaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15616 tatagtaaagatgtcgttgatctattttgtattcaggtatgtaactatagtatctttaga 15557
Query: 168 acttccgtacttaagtgttaaaattcctgccgttcttaagtgaaatcctttaaataatat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15556 acttccgtacttaagtgttaaaattcctgccgttcttaagtgaaatcctttaaataatat 15497
Query: 228 cacatttcgttacgtgaaaagttggtgaaatttgttatatgcgcacaatattatgtgaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15496 cacatttcgttacgtgaaaagttggtgaaatttgttatatgcgcacaatattatgtgaaa 15437
Query: 288 tgataaataaaagaaatttgttcaaataacatgtaggtttctaagctacaaagatagaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15436 tgataaataaaagaaatttgttcaaataacatgtaggtttctaagctacaaagatagaac 15377
Query: 348 ggtcaatcaacagactagagaacgaactttataaggctgctggctgagctgggattggct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15376 ggtcaatcaacagactagagaacgaactttataaggctgctggctgagctgggattggct 15317
Query: 408 aaccgtgtactgtctattgggactaggtgttacaagtccgttgtttcatattattttccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316 aaccgtgtactgtctattgggactaggtgttacaagtccgttgtttcatattattttccg 15257
Query: 468 agactatcctttttatctattctatatctgccagtttggaataaaaaaggcatcgctcat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15256 agactatcctttttatctattctatatctgccagtttggaataaaaaaggcatcgctcat 15197
Query: 528 actggacttatttgtgctaattagaataccccgagaacaccgatctttcgttagtgccat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15196 actggacttatttgtgctaattagaataccccgagaacaccgatctttcgttagtgccat 15137
Query: 588 ttcaaggagatctaaccaagtgtantattactattccgtagaatttttnttttttttgcc 647
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 15136 ttcaaggagatctaaccaagtgtaatattactataccgtagaattttt-ttttttttgcc 15078
Query: 648 aaccttttcctactatcagcttattaatcagatacattgtcaatttgatgggaataaaat 707
| || |||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 15077 agcc-tttcctactatcagctcattaatcagatacattgtcaatatgatgggaataaaat 15019
Query: 708 tcaga 712
||||
Sbjct: 15018 ccaga 15014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7597
Number of Sequences: 1807
Number of extensions: 7597
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)