BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE11FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1740 1538 0.0
>3x_Contig1740
Length = 21823
Score = 1538 bits (776), Expect = 0.0
Identities = 807/812 (99%), Gaps = 4/812 (0%)
Strand = Plus / Plus
Query: 85 tcgtcgttaaagttttggaagaaaaatgggctcgaggacgattccgatactggcatcgtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 tcgtcgttaaagttttggaagaaaaatgggctcgaggacgattccgatactggcatcgtt 2609
Query: 145 agtggtagtggatttggtaagaacagtggtggtgatgatgatgctaacgtggaaactatt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 agtggtagtggatttggtaagaacagtggtggtgatgatgatgctaacgtggaaactatt 2669
Query: 205 gaattaggtgagtatccaaacacgaagaaaagtagcaagaggagtaaatttggattcgat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 gaattaggtgagtatccaaacacgaagaaaagtagcaagaggagtaaatttggattcgat 2729
Query: 265 ttcgataagagatcgtcagtgtcaagtgaaagaaccattttcaattctcaggatgtcttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 ttcgataagagatcgtcagtgtcaagtgaaagaaccattttcaattctcaggatgtcttc 2789
Query: 325 cttgctaagttgaccgatgaaaaacgtaagatcgatgatttctacaagagacttgaggca 384
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2790 cttgctaagttgaccgatgaaaaacgtaagaccgatgatttctacaagagacttgaggca 2849
Query: 385 aaactttattccaagttcgaaactttgacaaaagaccttgaaaatgctggttttgcaaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aaactttattccaagttcgaaactttgacaaaagaccttgaaaatgctggttttgcaaat 2909
Query: 445 ttgcctaatcatctttacaatgaagcttttgaagcacagtcattgagcggtgttgctaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 ttgcctaatcatctttacaatgaagcttttgaagcacagtcattgagcggtgttgctaca 2969
Query: 505 agggtgaagtcaaatgaaaccgtgttttctggcatttcaagaaggttatctgtgcactcg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2970 agggtgaagtcaaatgaaaccgtgttttctggcatttcaagaaggttatctgtgcactcg 3029
Query: 565 cagcgtgaccatggcgatgaagaagacagtgccattgacgaggaagaagaggaagatgat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 cagcgtgaccatggcgatgaagaagacagtgccattgacgaggaagaagaggaagatgat 3089
Query: 625 gatgaccatgttcaggacaataccgcattgttaaactacgcagactacaatttgaaatct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3090 gatgaccatgttcaggacaataccgcattgttaaactacgcagactacaatttgaaatct 3149
Query: 685 caaaagagatctatcttaaagaaaaacgtcatcgatttgtacgttgacttggcccaatta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 caaaagagatctatcttaaagaaaaacgtcatcgatttgtacgttgacttggcccaatta 3209
Query: 745 aaatctttcatcgaattgaatcgtattggttttttctaaaatctccaaaaaattcgacaa 804
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3210 aaatctttcatcgaattgaatcgtattgg-tttttctaaaatctccaaaaaattcgacaa 3268
Query: 805 agtatttgagttgtagcatcaaaagggatctcattgaatcttggagaattcttccatgat 864
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3269 agta-ttgagttgtagcatcaaaagggatctcattgaatc-tggagaattcttccatgat 3326
Query: 865 gcacatatcttttttgccagatactatcactg 896
||||||||| ||||||||||||||||||||||
Sbjct: 3327 gcacatatc-tttttgccagatactatcactg 3357
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8614
Number of Sequences: 1807
Number of extensions: 8614
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)