BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZE12FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 985 0.0
>3x_Contig1742
Length = 17167
Score = 985 bits (497), Expect = 0.0
Identities = 557/573 (97%), Gaps = 3/573 (0%)
Strand = Plus / Minus
Query: 87 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14333 ttcatccctaatatctgttattggcttactattggaaaccaattgcggtggtaacgacaa 14274
Query: 147 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14273 ttttggaggcttggaattggttctcctagactctggtggtcggaacatcgaagccatctt 14214
Query: 207 tgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatatcagtta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14213 tgctttcacttcacacttgtcttttccgtgggtccatacaaataatataaatatcagtta 14154
Query: 267 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14153 atatcaccttatgcgacaagtaaacagcgtttttttctattcaaacgtttgagctgtttt 14094
Query: 327 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14093 tctttgaagtgtccgttgatattttcttctatcgaagtaaaaaggggaaacctcggttct 14034
Query: 387 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14033 cgtgtcttaatcctcagcggatcgcttttatactcagtttatcgttttaaaatgcctctc 13974
Query: 447 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13973 gtatcgtattccactgggatacgtccggaatattactcctctgggcctcaggattctctt 13914
Query: 507 atgtgccagatcattttttataatgcaaagagccgtttaagtgaatttgttttattaaat 566
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13913 atgtgccagatca-tctttataatgcaaagagccgtttaagtgaatttgttttattaaag 13855
Query: 567 ttcaaatt-aagccttgttcttaaaaaaaaaaaaatttata-acagcccacctgaccgac 624
||| |||| ||||||||| || ||||||||||||||| | | |||||| || ||| ||||
Sbjct: 13854 ttcgaattaaagccttgtcctgaaaaaaaaaaaaattcagagacagccgacgtgatcgac 13795
Query: 625 cactacaaacattttaagattattttaggttta 657
|| |||||||||||||||||||| | |||||||
Sbjct: 13794 cagtacaaacattttaagattatataaggttta 13762
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,290
Number of Sequences: 1807
Number of extensions: 28290
Number of successful extensions: 403
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)