BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF01RM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig499 375 e-103
>3x_Contig499
Length = 2671
Score = 375 bits (189), Expect = e-103
Identities = 226/237 (95%), Gaps = 1/237 (0%)
Strand = Plus / Minus
Query: 87 gcccattgccacgat-catcagataatgtgatgccagctttatctcccttttcaagcatg 145
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 gcccattgccacgtttcattagataatgtgatgccagctttatctcccttttcaagcatg 2126
Query: 146 atagggacatcgactgctattgtaaaattaacaatactgaccattctcatccaagtattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atagggacatcgactgctattgtaaaattaacaatactgaccattctcatccaagtattt 2066
Query: 206 ttaagtataggagactcgaccatttttctcgcataatgacccttcattttgattaaatgc 265
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 2065 ttaagtataggagactcgaccattagtctcgcataatgaccctccattttgattaaatgt 2006
Query: 266 ggacatgtgaatgcaaacgatgtgtttacatgtttaagtttaatacggacaccattc 322
|||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||
Sbjct: 2005 ggacatgtgaatgcaaacgatgggtttacaagttcaagtttagtacggacaccattc 1949
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,352
Number of Sequences: 1807
Number of extensions: 14352
Number of successful extensions: 235
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)