BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF02FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1677 1009 0.0
3x_Contig788 507 e-143
>3x_Contig1677
Length = 15081
Score = 1009 bits (509), Expect = 0.0
Identities = 548/559 (98%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 366 tttatattaatatatttttggttattattatgtacaggaaaatgagaagagaactcgttt 425
||||||||||||||||| |||||| || ||||||||| |||| |||||||||||||||
Sbjct: 15076 tttatattaatatatttcccgttattcttctgtacaggacaatgtgaagagaactcgttt 15017
Query: 426 tgacatggggaatttacatgcgtgaggtgttcgacgtatctgtctattccaagacaatct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15016 tgacatggggaatttacatgcgtgaggtgttcgacgtatctgtctattccaagacaatct 14957
Query: 486 tggcacctagcccttccaatgcagccttaaccttgtcagcgtcttccttagcgacgtttt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14956 tggcacctagcccttccaatgcagccttaaccttgtcagcgtcttccttagcgacgtttt 14897
Query: 546 ccttcaaaacctttggagcactttccacaaacttcttagcttcaaccaatgacaaaccta 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14896 ccttcaaaacctttggagcactttccacaaacttcttagcttcaaccaatgacaaaccta 14837
Query: 606 acaagttcttaacttctttgatgatcttaggcttagacttggcatcaaacgattctaact 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14836 acaagttcttaacttctttgatgatcttaggcttagacttggcatcaaacgattctaact 14777
Query: 666 tgatggagaaaatagtcttctcttcaacgacttcttcttccttggcttcttcagctggag 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14776 tgatggagaaaatagtcttctcttcaacgacttcttcttccttggcttcttcagctggag 14717
Query: 726 cagctggggcagctgaaccagcaccagctgctgggaacganatatctgggatgttcaatt 785
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14716 cagctggggcagctgaaccagcaccagctgctgggaacgaaatatctgggatgttcaatt 14657
Query: 786 gagtcttcaattcttgaatcaaagcag-agtttccaataaagtcaatttggnagatatct 844
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 14656 gagtcttcaattcttgaatcaaagcagaagtttccaataaagtcaatttgg-agatatct 14598
Query: 845 tgaacgatttgagaaatctttgnatcaaccgcagcagctggagtagatgtaccagcagtc 904
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 14597 tgaacgatttgagaaatctttggatcaaccgcagcagctggagtagatgtaccagcagtc 14538
Query: 905 gattgataacgaaccaaac 923
|||||||||||||||||||
Sbjct: 14537 gattgataacgaaccaaac 14519
>3x_Contig788
Length = 2349
Score = 507 bits (256), Expect = e-143
Identities = 256/256 (100%)
Strand = Plus / Minus
Query: 88 tggcaaaggacatcgagacgccgtacgagccaccaatcgctgtcggtgtcggtgattcct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggcaaaggacatcgagacgccgtacgagccaccaatcgctgtcggtgtcggtgattcct 199
Query: 148 ctttgttcgaccaatatccggaagagcaactggactatggcgttcagggcgaagatccat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctttgttcgaccaatatccggaagagcaactggactatggcgttcagggcgaagatccat 139
Query: 208 acggccaatactttttagatttctaacgaaatcttcaaagaaaaacataactcataatcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 acggccaatactttttagatttctaacgaaatcttcaaagaaaaacataactcataatcg 79
Query: 268 attcatttttgaacggatcgttcgtgaaactacctcttctttttactttgttatgtcggt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 attcatttttgaacggatcgttcgtgaaactacctcttctttttactttgttatgtcggt 19
Query: 328 cggattgcgtttatat 343
||||||||||||||||
Sbjct: 18 cggattgcgtttatat 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,144
Number of Sequences: 1807
Number of extensions: 10144
Number of successful extensions: 135
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)