BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF03FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1427 0.0
3x_Contig1700 109 1e-23
>3x_Contig1738
Length = 21411
Score = 1427 bits (720), Expect = 0.0
Identities = 806/827 (97%), Gaps = 6/827 (0%)
Strand = Plus / Minus
Query: 86 ctgaacatacatgtataagatgaagaaactgacctgggtaccattaatcatttgagcaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9141 ctgaacatacatgtataagatgaagaaactgacctgggtaccattaatcatttgagcaat 9082
Query: 146 atctgcgggttgattctttctcctgcaatgttccaaaaatgattttctaaatagttcaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9081 atctgcgggttgattctttctcctgcaatgttccaaaaatgattttctaaatagttcaaa 9022
Query: 206 ctgtttggtgtttaattcctgaccgactttccgttgaatggctggatctagattttgtag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021 ctgtttggtgtttaattcctgaccgactttccgttgaatggctggatctagattttgtag 8962
Query: 266 aacgtttctttggttattagactgattctgtacttgaggcgcatgttgttgcattctcgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8961 aacgtttctttggttattagactgattctgtacttgaggcgcatgttgttgcattctcgc 8902
Query: 326 ctgtgcttgcgcttgtgcttgtatgtgcgcttgagcttgggcttgagcttgagcctgtgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8901 ctgtgcttgcgcttgtgcttgtatgtgcgcttgagcttgggcttgagcttgagcctgtgc 8842
Query: 386 ttgtgcttgtgcttgggcttgagcttgagcttgtgcttgagcctgtgcctgcgcttgagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8841 ttgtgcttgtgcttgggcttgagcttgagcttgtgcttgagcctgtgcctgcgcttgagc 8782
Query: 446 ctgtgcttgttgctgctgttgtcttagtttctgctgctgtaattggttgaatgcctgctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8781 ctgtgcttgttgctgctgttgtcttagtttctgctgctgtaattggttgaatgcctgctg 8722
Query: 506 ttgttgcaacatctgtagcttttgttgctgttgctgttgcctctgttgatgcgcagcaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8721 ttgttgcaacatctgtagcttttgttgctgttgctgttgcctctgttgatgcgcagcaat 8662
Query: 566 tattgcggctctatccatatactgagggctctgtctactagcactcgcctgagctaaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8661 tattgcggctctatccatatactgagggctctgtctactagcactcgcctgagctaaaga 8602
Query: 626 ctcatcggccattgtaggggatccacttggcacattttgcggcgttccacgctgcgataa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8601 ctcatcggccattgtaggggatccacttggcacattttgcggcgttccacgctgcgataa 8542
Query: 686 catctgctgtaaaaaagtagtgccggcgggagactgcgtcngtgctacattggctgtatt 745
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8541 catctgctgtaaagaagtagtgccggcgggagactgcgtcggtgctacattggctgtatt 8482
Query: 746 cataggaattggtcctgcggctgga-aaaacatgga-tgtggaaagatagaga-ttcacc 802
||||||||||||||||||||||||| |||||||||| |||||| ||||||||| | ||||
Sbjct: 8481 cataggaattggtcctgcggctggagaaaacatggattgtggagagatagagactccacc 8422
Query: 803 tttc-tcatcgacggaggtgaattga-agttggagatgaattttta-cccatataacctg 859
||| ||||||||||||||||||||| ||||| |||||||| || || ||||| ||||
Sbjct: 8421 gttcttcatcgacggaggtgaattgacagttgagaatgaatttctagccaatatagcctg 8362
Query: 860 gggcgtaacccctgcggttacatcttccatcggccctaaattactat 906
|||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct: 8361 gggcgttacgcctgcgttaacatcttccatcggccctaaattactat 8315
>3x_Contig1700
Length = 16332
Score = 109 bits (55), Expect = 1e-23
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 354 gcttgagcttgggcttgagcttgagcctgtgcttgtgcttgtgcttgggcttgagcttga 413
|||||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 11502 gcttgagcctgggcttgagcttgagcctgggcttgagcttgagcctgggcttgagcttga 11443
Query: 414 gcttgtgcttgagcctgtgcctgcgcttgagcctg 448
|| |||||||| ||||| ||||| || ||||||||
Sbjct: 11442 gcctgtgcttgtgcctgcgcctgagcctgagcctg 11408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6020
Number of Sequences: 1807
Number of extensions: 6020
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)