BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC25ZF03RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1559                                                        1499   0.0  

>3x_Contig1559 
          Length = 10415

 Score = 1499 bits (756), Expect = 0.0
 Identities = 788/800 (98%)
 Strand = Plus / Plus

                                                                         
Query: 48    gcttcggtataagagcatatattgtgacacattctctgtccttcaggcagttattagagc 107
             |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 9605  gcttcggtataagagcatatatggggacacattctctgtccttcaggcagttattagagc 9664

                                                                         
Query: 108   caaattacaaagaggaaactttatgtcctaccataatatatcgaacatagtctctagcga 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9665  caaattacaaagaggaaactttatgtcctaccataatatatcgaacatagtctctagcga 9724

                                                                         
Query: 168   agcatccgcgctacaggctttatctcgtggaagaatcgtaaggcttaggatgattttatc 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |
Sbjct: 9725  agcatccgcgctacaggctttatctcgtggaagaatcgtaaggcttaggatgatggaagc 9784

                                                                         
Query: 228   atcaagtggtgatctacagataaaattacaggctttactgaggggtgcttttcaaagaag 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9785  atcaagtggtgatctacagataaaattacaggctttactgaggggtgcttttcaaagaag 9844

                                                                         
Query: 288   taagctgcaaagggtaaaagaagtaatgtcatgcgatcaattccaaaactttgggcctat 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9845  taagctgcaaagggtaaaagaagtaatgtcatgcgatcaattccaaaactttgggcctat 9904

                                                                         
Query: 348   cttgaaaggttatattgttgcaaggagatacactgacgccccaagtaaagttgctaatga 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9905  cttgaaaggttatattgttgcaaggagatacactgacgccccaagtaaagttgctaatga 9964

                                                                         
Query: 408   aattgtcagctttaatgcagtggtaaaggggatgctgacaaggtttgccatggaactcat 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965  aattgtcagctttaatgcagtggtaaaggggatgctgacaaggtttgccatggaactcat 10024

                                                                         
Query: 468   tatagatattgccgaacaaaacaacattgatagtttacaatccaaagtattaggctattt 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10025 tatagatattgccgaacaaaacaacattgatagtttacaatccaaagtattaggctattt 10084

                                                                         
Query: 528   aatcagaaaacgagtaagccagaagaagagcttctacaaaatgcgtgaatctgagatcat 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10085 aatcagaaaacgagtaagccagaagaagagcttctacaaaatgcgtgaatctgagatcat 10144

                                                                         
Query: 588   cattatacaaaaaaatatcagaagatatcaactacaaaacgcatacaaagttttaatgtc 647
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10145 cattatacaaaaaaatatcagaagatatcaactacaaaacgcatacaaagttttaatgtc 10204

                                                                         
Query: 648   aacgggcagtccgaagttaagtacggttagaaaattcgttcacattcttaatcaatcaga 707
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10205 aacgggcagtccgaagttaagtacggttagaaaattcgttcacattcttaatcaatcaga 10264

                                                                         
Query: 708   taacgaactattctctgctaacctnncaaagctcaaggctaatattaatgatgttaatga 767
             ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 10265 taacgaactattctctgctaacctccaaaagctcaaggctaatattaatgatgttaatga 10324

                                                                         
Query: 768   tgaagtangagaactgcaagaatcgttgagaaagaaggttttgatgaaagaatcacttga 827
             ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10325 tgaagtaggagaactgcaagaatcgttgagaaagaaggttttgatgaaagattcacttga 10384

                                 
Query: 828   naagagaagaattgatgtgt 847
              |||||||||||||||||||
Sbjct: 10385 aaagagaagaattgatgtgt 10404


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7050
Number of Sequences: 1807
Number of extensions: 7050
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)