BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF05RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1405 0.0
>3x_Contig1774
Length = 27771
Score = 1405 bits (709), Expect = 0.0
Identities = 825/859 (96%), Gaps = 4/859 (0%)
Strand = Plus / Minus
Query: 42 gcttaaaca-gatgcacccgtctgtataatctgatgtaacaactgtcaaccaacacaatg 100
||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 14715 gcttaaacaagatgcacccgtctgaa-aatctgatgtaacaactgtcaaccaacacaatg 14657
Query: 101 gacagttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14656 gacagttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgt 14597
Query: 161 ttagctatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgtttattt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 14596 ttagctatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgggtaaca 14537
Query: 221 tcaatgagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14536 tcaatgagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagc 14477
Query: 281 tgctaaatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476 tgctaaatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgc 14417
Query: 341 aacgatcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14416 aacgatcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaac 14357
Query: 401 tgatagtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 tgatagtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggt 14297
Query: 461 ggctgggcgtcgtctccgacaccttcgttgttatttcccccaatttggaaaccattgaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 ggctgggcgtcgtctccgacaccttcgttgttatttcccccaatttggaaaccattgaat 14237
Query: 521 ctaatattcacgttgcctcttagaaatgagactacaaaagaaatgagaattacagcaagt 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 ctaatattcacgttgcctcttagaaatgagactacaaaagaaatgagaattacagcaagt 14177
Query: 581 gttattgtgatcatgagcacctctttattcatttcaataggaattgatttgatgtacctc 640
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14176 gttattgtgatcatgagcacctcttcattcatttcaataggaattgatttgatgtacctc 14117
Query: 641 atggcacttctgtaccacgatttagcctcgaagaaccctgtctcttgagtaggtttctta 700
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14116 atggcacttctgtaccacgatttagcctcgaagaacctggtctcttgagtaggtttctt- 14058
Query: 701 aactttttttccatcangagtgactctttcaggagaagtccatttgtcccatttttttgg 760
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14057 aactttttttccatcaggagtgactcttccaggagaagtccatttgtcccatttttttgg 13998
Query: 761 gacccaattatttaacctagattcttcaaaatgcacaatggtctcggatttccttganag 820
|| ||||||||| ||| ||||| | ||||||||||||||| |||||||| ||| ||| ||
Sbjct: 13997 gagccaattattaaacgtagatacatcaaaatgcacaatgttctcggatatccatgagag 13938
Query: 821 tgcccaaggtagttgtaacttgaatttcggaggaaaattttttatcgattcctcccctgc 880
|||||| ||||||||||||||| | ||||| || |||||| ||||||||||| ||||||
Sbjct: 13937 tgcccagtgtagttgtaacttgagtatcggaagataattttctatcgattcct-ccctgc 13879
Query: 881 caaaactttgttcgtaaaa 899
|| || ||||||||||||
Sbjct: 13878 cagaagcttgttcgtaaaa 13860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7259
Number of Sequences: 1807
Number of extensions: 7259
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)