BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF06FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1566 0.0
>3x_Contig1741
Length = 21706
Score = 1566 bits (790), Expect = 0.0
Identities = 829/838 (98%), Gaps = 3/838 (0%)
Strand = Plus / Minus
Query: 87 atcaagattttttatatcagagctctcggtcataggtcactgcgctccctttgagttttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7304 atcaagattttttatatcagagctctcggtcataggtcactgcgctccctttgagttttg 7245
Query: 147 aagagcagatgcgtacacttaggtcgaggagtgataaaagtgagtctacttgtaatagtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7244 aagagcagatgcgtacacttaggtcgaggagtgataaaagtgagtctacttgtaatagtg 7185
Query: 207 ccagttcaagtgtggatacaagaggaagaatgcagacaataactccagaagaacctggga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7184 ccagttcaagtgtggatacaagaggaagaatgcagacaataactccagaagaacctggga 7125
Query: 267 agttagaatacgaactggatgcagcttctgctgcgggaaataataatgttaggtctagat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7124 agttagaatacgaactggatgcagcttctgctgcgggaaataataatgttaggtctagat 7065
Query: 327 cacagtcgatggcgctattgtcagatgaattgcagaccgaatatgacgtgctgcaggaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7064 cacagtcgatggcgctattgtcagatgaattgcagaccgaatatgacgtgctgcaggaca 7005
Query: 387 ccgagcattcgttgagaaatactagactattagaattggatatagccaaagctgtttcgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7004 ccgagcattcgttgagaaatactagactattagaattggatatagccaaagctgtttcgg 6945
Query: 447 atctggaaaccatcgagcctcgcacagaggacactgtgagaataatagcgttattgaacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6944 atctggaaaccatcgagcctcgcacagaggacactgtgagaataatagcgttattgaacc 6885
Query: 507 gatctctgtcggcgatatcgcactggtcattacaagcacaactatcccactgggaaaaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6884 gatctctgtcggcgatatcgcactggtcattacaagcacaactatcccactgggaaaaca 6825
Query: 567 gaaaggaaaaggatgaacgttttgcagttgaaaagaatctagtgaagaaagaagctgaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6824 gaaaggaaaaggatgaacgttttgcagttgaaaagaatctagtgaagaaagaagctgaat 6765
Query: 627 attttaagaataaacttcttgaaagtgaaaaattacaaaagcaaacgcaatcccaattag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6764 attttaagaataaacttcttgaaagtgaaaaattacaaaagcaaacgcaatcccaattag 6705
Query: 687 atttatcttccgaaacatctaaattggtcagcagcgctccaataacaggtggtagccctg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6704 atttatcttccgaaacatctaaattggtcagcagcgctccaataacaggtggtagccctg 6645
Query: 747 ccacagaggcaaccctactaagtccaagacgagtggtgaaacaaacggaaatagcatccc 806
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 6644 ccacagaggcaaccctactaagtccaagacgagtggtgaaacaacggaaaatagcatccc 6585
Query: 807 cacgtcgtaacaacactcgcgctcatacaccagtctccactctcaagcttgtcgagaaca 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6584 cacgtcgtaacaacactcgcgctcatacaccagtctccactctcaagcttgtcgagaaca 6525
Query: 867 cc-aaccacattcttagttaaagagaaattt-aacgatcagac-aaccaagatctaat 921
|| |||||||| || ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 6524 ccaaaccacatcctaggttaaagagaaatttaaacgatcagacaaaccaagatctaat 6467
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5836
Number of Sequences: 1807
Number of extensions: 5836
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)