BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF07FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1352 0.0
>3x_Contig1665
Length = 15710
Score = 1352 bits (682), Expect = 0.0
Identities = 754/772 (97%), Gaps = 5/772 (0%)
Strand = Plus / Plus
Query: 114 atgtatttgagaagtgtatgtagtgacagagaaccaaacaatgcaacaccataaatgtag 173
|||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||
Sbjct: 51 atgtatttgagaagtgtatgtagtgaaagagaaaaaaacaatgaaacaaaataaatgtag 110
Query: 174 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 170
Query: 234 ggcccagcaagatcggaatcctcctggatttctttcgataaacctttgtgagaaagcggt 293
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 171 ggcccagcaagatcggaatcctcctggatgtctttcgataaacctttgtgagaaagcggt 230
Query: 294 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 290
Query: 354 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 350
Query: 414 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 410
Query: 474 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 470
Query: 534 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 530
Query: 594 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 590
Query: 654 aagcaattttgcttgtgatgctcaacgtattaagaatatatgctggatttgcttggcttt 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 591 aagcaattttgcttgtgatgctcaacgtattaag-atatatgctggatttgcttggcttt 649
Query: 714 tatcaaggttatctgtctgctttgttcattgttttcacggcaatagaaaaagttcagatt 773
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 650 tatcaaggttatctgtctgctttgttcattgttttcacggcaatagaaaaggttcagatt 709
Query: 774 caaacttttgttttccttttttttttcatggtggggtgacatgtnaatggnaaaacatgt 833
|||||||||||||||| ||||||||||||||| || |||||||| | ||| |||||||||
Sbjct: 710 caaacttttgttttcc-tttttttttcatggt-ggttgacatgtaattggaaaaacatgt 767
Query: 834 cgaattaatatgtaatgttaggggtgttatgtctggtttcaaatggctaaaa 885
||||||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct: 768 cgaattaatatgtaatg-taagggtgttatgtct-gtttcaaatggctaaaa 817
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7380
Number of Sequences: 1807
Number of extensions: 7380
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)