BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF07RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1358 0.0
>3x_Contig1794
Length = 36744
Score = 1358 bits (685), Expect = 0.0
Identities = 794/823 (96%), Gaps = 6/823 (0%)
Strand = Plus / Minus
Query: 50 atcgatcagattgttctt-ggtctgaaataaactctatcctaggaagtgctgggctagca 108
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 36710 atcgatcagattgttcaaaggtctgaaataaactctatcctaggaagtgctgggctagca 36651
Query: 109 cgacttgaaagtttaagaaaaaaatacattaattactatgtctcggattggagagatctc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36650 cgacttgaaagtttaagaaaaaaatacattaattactatgtctcggattggagagatctc 36591
Query: 169 acctctattcttttggatcaaatatttgttgatagctctggtaaagtttcatcaaaagaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36590 acctctattcttttggatcaaatatttgttgatagctctggtaaagtttcatcaaaagaa 36531
Query: 229 aaggatcaaatcaaagaaaagttcaagaagtttcatgatggattcgaagacttggtatcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36530 aaggatcaaatcaaagaaaagttcaagaagtttcatgatggattcgaagacttggtatcc 36471
Query: 289 agatcaaaatcgtaccgtatttctgatccagctctaaaaaaaatattgagacaagagatc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36470 agatcaaaatcgtaccgtatttctgatccagctctaaaaaaaatattgagacaagagatc 36411
Query: 349 ctttcgttggtactccctatgtatgaacgtttctacaaccgttataaggactcctttaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36410 ctttcgttggtactccctatgtatgaacgtttctacaaccgttataaggactcctttaaa 36351
Query: 409 catcccagaaaacacatcaaatatactccctctgagttgatgaacgttcttaatactatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36350 catcccagaaaacacatcaaatatactccctctgagttgatgaacgttcttaatactatc 36291
Query: 469 attaaataagaactacatatttaataaatctttgtctatagaatctgatatgtttgttgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36290 attaaataagaactacatatttaataaatctttgtctatagaatctgatatgtttgttgg 36231
Query: 529 ttcaggagattcacgctgattatacctttctaggttattcttgaaatcctccanagcatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 36230 ttcaggagattcacgctgattatacctttctaggttattcttgaaatcctccaaagcatg 36171
Query: 589 attggactgcaaaacattcatcgaatatgattgtgaaacgcatggagacatcgctggttc 648
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 36170 attggactgcaaaacattcatcgaatatgattgtgaaagcaatggagacatcgctggttc 36111
Query: 649 actttgcagtgngtgccaagatgtgcgctctttgcctatcattgcagttaggttcatgga 708
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 36110 actttgcagtgggtgccaagatgtgcgctctttgcctatcattgcagttaggtccatgga 36051
Query: 709 cgctttactctcttggtcatcttccgttggtacttggacgaattaaaagccgctgagtgg 768
||||||||||||||||||||||||||||| ||||| |||||| || |||| |||||||||
Sbjct: 36050 cgctttactctcttggtcatcttccgttgttactt-gacgaagtagaagcggctgagtgg 35992
Query: 769 gaatcgaaatagtgtgggaatgggatggttacaacttcctgaattgtgttctgcgaatga 828
||||||| ||||||| || || ||||||| |||||| |||||||||| ||||| ||||
Sbjct: 35991 aaatcgaattagtgtgtgattgtgatggttccaactt-ctgaattgtg-tctgcagatga 35934
Query: 829 atga-aaaaaacattatcctgttcatttaccttccccagctcc 870
|||| |||| |||| |||||||||| |||||||| ||||||||
Sbjct: 35933 atgagaaaatacatcatcctgttca-ttaccttcgccagctcc 35892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7474
Number of Sequences: 1807
Number of extensions: 7474
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)