BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF08FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig672 1606 0.0
>3x_Contig672
Length = 2319
Score = 1606 bits (810), Expect = 0.0
Identities = 835/841 (99%), Gaps = 2/841 (0%)
Strand = Plus / Minus
Query: 88 cagaagagcgtgaaccaacagcagatgctaatgatgctcaaagagcaatctctggaaatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 cagaagagcgtgaaccaacagcagatgctaatgatgctcaaagagcaatctctggaaatc 1326
Query: 148 aagaggaatcaattacgttagaggaatttaagatgattaagaaaaatgtccttgaacacg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 aagaggaatcaattacgttagaggaatttaagatgattaagaaaaatgtccttgaacacg 1266
Query: 208 ttaatatggcattgaatgaatcgtctttgtctcttgagtttgtgtccttattattaagtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 ttaatatggcattgaatgaatcgtctttgtctcttgagtttgtgtccttattattaagtt 1206
Query: 268 caacgagaacttctgcaggtataagttcaatgtcaccatacttgaagaagattgcgcctc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 caacgagaacttctgcaggtataagttcaatgtcaccatacttgaagaagattgcgcctc 1146
Query: 328 ctgcttctttgaatgctgataaagtacctttggatattttggatgaacacgaaaaattaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 ctgcttctttgaatgctgataaagtacctttggatattttggatgaacacgaaaaattaa 1086
Query: 388 catatgatatcattcacaaaggttggaacctgcgaagtctagaagattgtaaaaggctat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 catatgatatcattcacaaaggttggaacctgcgaagtctagaagattgtaaaaggctat 1026
Query: 448 taaaacagcattaccagatactttccaaatctgtagaaagtgagtatcattactggaagc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 taaaacagcattaccagatactttccaaatctgtagaaagtgagtatcattactggaagc 966
Query: 508 aaatctcagataatatcaccaataaagatgtgctgtttaaaatgaaagacaaaaacacgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 aaatctcagataatatcaccaataaagatgtgctgtttaaaatgaaagacaaaaacacgg 906
Query: 568 ggagaagaaccttgggaataaaatacggatttgatgactctggatcatgttattcagcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ggagaagaaccttgggaataaaatacggatttgatgactctggatcatgttattcagcag 846
Query: 628 ataaag-gtatcgctctcttacgtgcgacttccgagggctctcagttagaactagtaccc 686
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ataaagtgtatcgctctcttacgtgcgacttccgagggctctcagttagaactagtaccc 786
Query: 687 atcattgattctggtatcaatgttggaatcagtangggttcatcagaacagtttgttaga 746
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 785 atcattgattctggtatcaatgttggaatcagtaggggttcatcagaacagtttgttaga 726
Query: 747 gtcaggatattcactaaaattgaacaagaagatgattacctactttcagttcagagttcg 806
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 725 gtcaggatattcactaaaattgaacaagaagatgattacctactttcaggtcagagttcg 666
Query: 807 ctcaatgagcttttgttgagttctcggagcgacattcagtcacagatagcaaaattaaga 866
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 665 ctcaatgagcttttgttgagttctcggagcgacatcaagtcacagatagcaaaattaaga 606
Query: 867 ttctttatatttgagaaagaa-tgatgcatcagttgaagaaggaggctggacaactttta 925
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttctttatatttgagaaagaattgatgcatcagttgaagaaggaggctggacaactttta 546
Query: 926 c 926
|
Sbjct: 545 c 545
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7498
Number of Sequences: 1807
Number of extensions: 7498
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)