BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF09RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1362 0.0
>3x_Contig1770
Length = 29267
Score = 1362 bits (687), Expect = 0.0
Identities = 795/818 (97%), Gaps = 11/818 (1%)
Strand = Plus / Minus
Query: 49 gcaaagcctaatgctcgaagtcaaacttaccgttaacccagtcattaaccatatccaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5535 gcaaagcctaatgctcgaagtcaaacttaccgttaacccagtcattaaccatatccaaag 5476
Query: 109 cattttctggttggtcgaatggtaccatgtgtccagcaccgtatactcttaggaaggtga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5475 cattttctggttggtcgaatggtaccatgtgtccagcaccgtatactcttaggaaggtga 5416
Query: 169 acttgtcaaagttcttaaccttaccggccttcttaccaacagaagtaacctaattcttaa 228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5415 acttgtcaaagttcttaaccttaccggccttcttaccaacagaagtaacccaattcttaa 5356
Query: 229 ctggttgtttagcaaattcttcggcatccttatatggcaataagttggtccaagcttggt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355 ctggttgtttagcaaattcttcggcatccttatatggcaataagttggtccaagcttggt 5296
Query: 289 tacccaaccagttacagatgaaatccttgtcacctgcgtaaattagaactggaagatctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5295 tacccaaccagttacagatgaaatccttgtcacctgcgtaaattagaactggaagatctt 5236
Query: 349 gttccaacaattcggtaacgtgcttgtggtatggtttcatccaatcacctgcaaataaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235 gttccaacaattcggtaacgtgcttgtggtatggtttcatccaatcacctgcaaataaga 5176
Query: 409 agtttctgttaatgtcgaagttacacgattcatagttgtcaacttcagcaccaacggctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175 agtttctgttaatgtcgaagttacacgattcatagttgtcaacttcagcaccaacggctt 5116
Query: 469 ccttaacgaaatccaagttcaaatattcgtccatgtatttcatttcatcgtaacacaatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5115 ccttaacgaaatccaagttcaaatattcgtccatgtatttcatttcatcgtaacacaatt 5056
Query: 529 caccttgacattctttacgaatatcgtaaacgttcttaccagtactttgataaggaccca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5055 caccttgacattctttacgaatatcgtaaacgttcttaccagtactttgataaggaccca 4996
Query: 589 tttgagcgttattacaatagatggaggctggaacacaagacccaacggattcgtattcgt 648
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4995 tttgagcgttattacaatagatggaggctggaacacaagaccaaacggattcgtattcgt 4936
Query: 649 -acaggattggatc-agtttagacatctgggt-aagttt-caacata-tgtcacattgtt 703
||||||||||||| ||||||||||||| ||| |||||| ||||||| ||||||||||||
Sbjct: 4935 aacaggattggatcaagtttagacatcttggtaaagtttccaacatattgtcacattgtt 4876
Query: 704 ctgtttc--atacggatggttca-cacctt-accac-agccattgg-tcgtagtatggat 757
||| ||| |||||||||||||| |||||| ||||| ||||||||| |||||||||||||
Sbjct: 4875 ctggttccaatacggatggttcaccaccttcaccacaagccattggttcgtagtatggat 4816
Query: 758 attggcttaagggatcgtttagaccgttcccgattagaacagaattcaagttgaaagaac 817
|||||||||| |||||| |||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 4815 attggcttaatggatcggttagaccgttaccgataagaacagaagtcaagttgaaagaac 4756
Query: 818 gttcttcagttggatgagaataaatttcagttgcgaac 855
||||||||||||||||||| |||||||||| ||||||
Sbjct: 4755 gttcttcagttggatgagataaaatttcagtagcgaac 4718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5981
Number of Sequences: 1807
Number of extensions: 5981
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)