BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF10FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1576 1522 0.0
>3x_Contig1576
Length = 13648
Score = 1522 bits (768), Expect = 0.0
Identities = 784/789 (99%), Gaps = 1/789 (0%)
Strand = Plus / Minus
Query: 88 taaaaaccttaactacaacaagccaacgccaatccaatcaaaggctattcctcccgcttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6165 taaaaaccttaactacaacaagccaacgccaatccaatcaaaggctattcctcccgcttt 6106
Query: 148 gaaaggtagtgatatcattgggttagcccaaacaggttccggtaaaacagcggcatttgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6105 gaaaggtagtgatatcattgggttagcccaaacaggttccggtaaaacagcggcatttgc 6046
Query: 208 aattcctatcttgaaccaactatggcacgatcaacaaccttattatgcgtgtattttggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045 aattcctatcttgaaccaactatggcacgatcaacaaccttattatgcgtgtattttggc 5986
Query: 268 tcctactagagaattagcgcaacagattaaggagacgtttgattctttaggatctcttat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5985 tcctactagagaattagcgcaacagattaaggagacgtttgattctttaggatctcttat 5926
Query: 328 gggtgttagatcaacttgtattgttggtggtatgagtatgatggaccaagctcgtgattt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5925 gggtgttagatcaacttgtattgttggtggtatgagtatgatggaccaagctcgtgattt 5866
Query: 388 aatgcggaagccacacatcataattgccacacctggtagattaatggaccatctggaaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5865 aatgcggaagccacacatcataattgccacacctggtagattaatggaccatctggaaaa 5806
Query: 448 tactaaaggtttcaatttacgtaaattgaagtaccttgttatggatgaagctgatagatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5805 tactaaaggtttcaatttacgtaaattgaagtaccttgttatggatgaagctgatagatt 5746
Query: 508 attagacatggaattcggacctgtgctagaccgtatcttgaatatcattcctacacaagg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5745 attagacatggaattcggacctgtgctagaccgtatcttgaatatcattcctacacaagg 5686
Query: 568 tagaactacatatttgttctctgcaacaatgacttcgaagattgataaacttcaaagagc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5685 tagaactacatatttgttctctgcaacaatgacttcgaagattgataaacttcaaagagc 5626
Query: 628 atcacttacgaatccagttaaatgtgcagtatccaacaaataccaaacagtggacacttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5625 atcacttacgaatccagttaaatgtgcagtatccaacaaataccaaacagtggacacttt 5566
Query: 688 agtccaaactttgatggtggtccctggagggttgaagaacacttttttgatatatctttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5565 agtccaaactttgatggtggtccctggagggttgaagaacacttttttgatatatctttt 5506
Query: 748 gaatgaatttattgggaagtcaaccatcgtgtttactagaactaangcaaacgctgagag 807
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5505 gaatgaatttattgggaagtcaaccatcgtgtttactagaactaaggcaaacgctgagag 5446
Query: 808 aatatctaacctctgncatctattggaatttagtgcgacggcattacatggggnacttga 867
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5445 aatatctaacctctgcaatctattggaatttagtgcgacggcattacatgggg-acttga 5387
Query: 868 atcanaatc 876
|||| ||||
Sbjct: 5386 atcaaaatc 5378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5377
Number of Sequences: 1807
Number of extensions: 5377
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)