BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF10RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1263 1439 0.0
>3x_Contig1263
Length = 6840
Score = 1439 bits (726), Expect = 0.0
Identities = 821/845 (97%), Gaps = 6/845 (0%)
Strand = Plus / Minus
Query: 47 ctatatctaaagtaactgagaagtctgcatttcagattattaagtcatatgtgaaatatc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 ctatatctaaagtaactgagaagtctgcatttcagattattaagtcatatgtgaaatatc 2811
Query: 107 ctagaagccaaattgatttaatatacgataatttgaatcaaataaaatccaagacgaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810 ctagaagccaaattgatttaatatacgataatttgaatcaaataaaatccaagacgaact 2751
Query: 167 gtaatgtggttattctaaacttacaaaccattcatgaatcaaatacatggtttgaacagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 gtaatgtggttattctaaacttacaaaccattcatgaatcaaatacatggtttgaacagc 2691
Query: 227 tacccatctctgtaaacatcgatcctccaccaagtgcaacgagggtcataagtgtaggtg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 tacccatctctgtaaacatcgatcctccaccaagtgcaacgagggtcataagtgtaggtg 2631
Query: 287 gagtaggtggaaagtgcaaagtggcattggaaatgatcctaacactattagaaaccggga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 gagtaggtggaaagtgcaaagtggcattggaaatgatcctaacactattagaaaccggga 2571
Query: 347 gtatcatatcccactgtcttatgttcaaacaaaatttaattcctcatcgccttcaatggg 406
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 gtatctgatcccactgtcttatgttcaaacaaaatttaattcctcatcgccttcaatggg 2511
Query: 407 aatgtggtcggaggtttatggttatcatttattagaatgtatcccctatagtataccact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 aatgtggtcggaggtttatggttatcatttattagaatgtatcccctatagtataccact 2451
Query: 467 aatgataaaattaatgtagtatagacataacgtacataaatttgggactaggccccccgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2450 aatgataaaattaatgtagtatagacataacgtacataaatttgggactaggccccccgt 2391
Query: 527 atttccccccattacaagtcatcacctccctctttatctgtgtccgagtatttctttaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2390 atttccccccattacaagtcatcacctccctctttatctgtgtccgagtatttctttaat 2331
Query: 587 tcctcgattgcaaatgaatttgccaaccttactatcgaagcatgctgaaacataataatt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 tcctcgattgcaaatgaatttgccaaccttactatcgaagcatgctgaaacataataatt 2271
Query: 647 taaatagaanatagcttttcaagggcaataaaacaaagagtgaagtgacaaagcaaaacc 706
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2270 taaatagaaaatagcttttcaagggcaataaaacaaagagtgaagtgacaaagcaaaacc 2211
Query: 707 caagaaagctccacttcatcttttcagt-agcccattatacgcttgcatttgtgcagttc 765
|||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||
Sbjct: 2210 caagaaagctccacttcatc-tttcagtaagcccattatacgctggcattgtggcagttc 2152
Query: 766 accatgtttgaaagaagt-aaagggaattctttttattctttcgga-gcttccaccagga 823
|||||||||||||||||| ||||| ||| |||||||||| |||||| ||| | |||||||
Sbjct: 2151 accatgtttgaaagaagtaaaaggaaatcctttttattc-ttcggaggctccaaccagga 2093
Query: 824 tcaaaggaattaattccaag-aactagcattagccggaacttctctaacgctaaaccttt 882
|||||||||| ||| ||||| |||||||| |||||| |||| ||||| ||||||| ||||
Sbjct: 2092 tcaaaggaataaatcccaagaaactagcaatagccgtaactcctctagcgctaaagcttt 2033
Query: 883 gccgc 887
|||||
Sbjct: 2032 gccgc 2028
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6509
Number of Sequences: 1807
Number of extensions: 6509
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)