BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF11FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1586 0.0
>3x_Contig1737
Length = 17214
Score = 1586 bits (800), Expect = 0.0
Identities = 835/843 (99%), Gaps = 3/843 (0%)
Strand = Plus / Minus
Query: 87 ttaacataagaggaactcaaaaacaaagtcaggcgaccaataaggtcgggagccatatac 146
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11176 ttaacataagaggaactcaaaaacaaag-caggcgaccaataaggtcgggagccatatac 11118
Query: 147 agtcctttcctgtttggaaacctgcaagggccgtagaagaagttgggggtatttaaaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11117 agtcctttcctgtttggaaacctgcaagggccgtagaagaagttgggggtatttaaaata 11058
Query: 207 gtctgtgagttttgttaatgtttgagatcacacttcaaacatgttcacaataattgatgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11057 gtctgtgagttttgttaatgtttgagatcacacttcaaacatgttcacaataattgatgg 10998
Query: 267 aaacacacaattggaatcaaaagggtatcgatcaatcaacgtagaattggttcaccttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10997 aaacacacaattggaatcaaaagggtatcgatcaatcaacgtagaattggttcaccttca 10938
Query: 327 aactctcgatttcataaacatcgtcaacacctgacttcacaataatggagccgatgttgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10937 aactctcgatttcataaacatcgtcaacacctgacttcacaataatggagccgatgttgt 10878
Query: 387 tacctgtggagaagaagaaagtgttagtggaagtgacagtaccgttattgaagtaaagtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10877 tacctgtggagaagaagaaagtgttagtggaagtgacagtaccgttattgaagtaaagtt 10818
Query: 447 cgataatgtttctgtcaacgataccataaacatcgaaggtgctagaattactagaaggtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10817 cgataatgtttctgtcaacgataccataaacatcgaaggtgctagaattactagaaggtg 10758
Query: 507 gattgctaactgagagtctttgagtgaagaatgggttctcttgaacgaatgggatgttgg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10757 gattgctaactgagagtctttgagtgaagaatgggttctcttgaacgaatgggatgttgg 10698
Query: 567 aatgaccacggtccaagaagaattgcttggaattagcttcgtagcctaatctcaagtatt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10697 aatgaccacggtccaagaagaattgcttggaattagcttcgtagcctaatctcaagtatt 10638
Query: 627 cgtcgctgtccttgtcaccttggaagtataaggataaatcggtgaagacccagttatgga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10637 cgtcgctgtccttgtcaccttggaagtataaggataaatcggtgaagacccagttatgga 10578
Query: 687 ttccagtgaaattgacggaatactcaagagagaattcgaatacaccggtagggtcttcaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10577 ttccagtgaaattgacggaatactcaagagagaattcgaatacaccggtagggtcttcaa 10518
Query: 747 actcaagcacttcgtgagatgaagagttcaacgtcaagttttcaagggtgtatgaagtac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10517 actcaagcacttcgtgagatgaagagttcaacgtcaagttttcaagggtgtatgaagtac 10458
Query: 807 cgttctttctcagactagtgaagtcaagcacagtttgactgtttcataccaacgcagttg 866
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 10457 cgttctttctcagactagtgaagtcaagcacaggttgactgttcaataccaacgcagttg 10398
Query: 867 tgtttgaatt-atattgtattcagtaatggtgaagtttctgaccaaact-atanatgaac 924
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 10397 tgtttgaattaatattgtattcagtaatggtgaagttcctgaccaaactcatagatgaac 10338
Query: 925 gcc 927
|||
Sbjct: 10337 gcc 10335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6250
Number of Sequences: 1807
Number of extensions: 6250
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)