BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC25ZF11RM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1313                                                        1445   0.0  

>3x_Contig1313 
          Length = 8010

 Score = 1445 bits (729), Expect = 0.0
 Identities = 817/841 (97%), Gaps = 4/841 (0%)
 Strand = Plus / Plus

                                                                       
Query: 78  gattaagaaattgacacttttaaaaggctcctcgatcaccttaaacaggctataatcgat 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gattaagaaattgacacttttaaaaggctcctcgatcaccttaaacaggctataatcgat 61

                                                                       
Query: 138 aatgtcagctgaagaagcaaacacgagatctaaagaaccaacgtcaattttctctgtccc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aatgtcagctgaagaagcaaacacgagatctaaagaaccaacgtcaattttctctgtccc 121

                                                                       
Query: 198 tgccgaaactatattagcttttttcattgaaccttcgacgagtaaaacgttgtctctatc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgccgaaactatattagcttttttcattgaaccttcgacgagtaaaacgttgtctctatc 181

                                                                       
Query: 258 tagtaatagtattttatcttcatctttcacatcattgataataaagttacactcaaaaaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tagtaatagtattttatcttcatctttcacatcattgataataaagttacactcaaaaaa 241

                                                                       
Query: 318 cccatacccctgcacatcttgctctactacccttacatggttctttttgaagtaatcaat 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccatacccctgcacatcttgctctactacccttacatggttctttttgaagtaatcaat 301

                                                                       
Query: 378 gtaaagtaatttcccggattgccatgttatagtgtcaatatcgcaacctagttgtaacag 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtaaagtaatttcccggattgccatgttatagtgtcaatatcgcaacctagttgtaacag 361

                                                                       
Query: 438 aacgttgaagtctaacttgaaaaaagccctctcgcgcttatgcaatgataacacgcacat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aacgttgaagtctaacttgaaaaaagccctctcgcgcttatgcaatgataacacgcacat 421

                                                                       
Query: 498 gagatgcattgacgttacaaatcctataagatcattggtactggagtaagtgagtttagc 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagatgcattgacgttacaaatcctataagatcattggtactggagtaagtgagtttagc 481

                                                                       
Query: 558 agtaaactttgggggtacgttatcaagtttatatgaacataccaactcgatatcatactt 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtaaactttgggggtacgttatcaagtttatatgaacataccaactcgatatcatactt 541

                                                                       
Query: 618 ttcagctgtctggtggtagtggaaatccatggagtatattttttcagaggcaaggcatag 677
           ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 542 ttcagctgtctggtggtagtggaaatccatggagtatatctctccagaggcaaggcatag 601

                                                                       
Query: 678 aatgcacgtatcatttttatcagaacacttctggttaggtattactaacgcatttactat 737
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 602 aatgcacgtatcatttttatcagaacacttctggttaggtattactaacgcatctactat 661

                                                                       
Query: 738 tctggttggcgctaaaaatttagcatcggatcctagtacatgaatggttcggtctgttag 797
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 662 tctgtttggcgctaaaaatttagcatcggatcctagtacatgaatggttcgttctgttag 721

                                                                       
Query: 798 tattaataaggggttggggctattatttggaaatccttgcaggatcattcaattggttcc 857
           |||||||||| |||| |||||| ||||  | ||| ||||||| |||| |||||| |||||
Sbjct: 722 tattaataagtggtttgggcta-tattctggaatacttgcagtatca-tcaatttgttcc 779

                                                                       
Query: 858 ttatc-aaatcccaatcagccaaagaatcg-gccccttcaaatctgcaagtccgtttggc 915
            |||| ||||||||||||  |||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 780 atatcaaaatcccaatcaagcaaagaatcgagccccatcgaatctgcaagttcgtttggc 839

            
Query: 916 c 916
           |
Sbjct: 840 c 840


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6767
Number of Sequences: 1807
Number of extensions: 6767
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)