BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF12FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1469 0.0
>3x_Contig1728
Length = 20685
Score = 1469 bits (741), Expect = 0.0
Identities = 792/804 (98%), Gaps = 4/804 (0%)
Strand = Plus / Plus
Query: 87 tggacctagaagaacagcacagggctagcactgtatcttccggtgacatccaatcggcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7687 tggacctagaagaacagcacagggctagcactgtatcttccggtgacatccaatcggcgt 7746
Query: 147 ccacaaaattaaaaagatctttgcaatctcaaggccggagaaccgttggcgtggattcag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7747 ccacaaaattaaaaagatctttgcaatctcaaggccggagaaccgttggcgtggattcag 7806
Query: 207 ataatactgctgatgccactggttccaatagcattaacttatgaacccattccaaacaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7807 ataatactgctgatgccactggttccaatagcattaacttatgaacccattccaaacaaa 7866
Query: 267 atatatataatgtactcatatattgaagtatagtaaaaaaaaaatgaatgaaagcaaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7867 atatatataatgtactcatatattgaagtatagtaaaaaaaaaatgaatgaaagcaaaaa 7926
Query: 327 tgcatgtttaaaagtgtgggctggtatgacctcggaaaactgtatactttcagagatgaa 386
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 7927 tgcatgtttaaaagtgtgggctggtatgtcctcggaaaactgtattctttcagagatgaa 7986
Query: 387 taaacgcacccgttctggtttctttctcttagtttcgggctggtaatctgctgggaaaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7987 taaacgcacccgttctggtttctttctcttagtttcgggctggtaatctgctgggaaaaa 8046
Query: 447 ccctggaatgaatctgctacagaccattcttaacatttagctttttctgtttccagcagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 ccctggaatgaatctgctacagaccattcttaacatttagctttttctgtttccagcagg 8106
Query: 507 ctgggccgttctctgtggcattcattttcttccatctgtaaacgtcgatgcgaaaaaagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 ctgggccgttctctgtggcattcattttcttccatctgtaaacgtcgatgcgaaaaaagt 8166
Query: 567 ctatcaggttcacgttaacatttcatttcattttgatatgatcgacatatatactgtgcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 ctatcaggttcacgttaacatttcatttcattttgatatgatcgacatatatactgtgcc 8226
Query: 627 atggcatgaaaatgttaagaacacttttggagaaaaacatacagagagtcgttttgacag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 atggcatgaaaatgttaagaacacttttggagaaaaacatacagagagtcgttttgacag 8286
Query: 687 caattattcggttggaaaagtgggaactgcctgggtttatgattggtctccatctataaa 746
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8287 caattattcggttggaaaagtgggaactgcctgggttaatgattggtctccatctataaa 8346
Query: 747 gcatcaggtttcaattcaaattgaaacaattctttttttccctttaaagttgttttctca 806
|||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct: 8347 gcatcagg-ttcaattcaaatcgaaacaattctttttttccctttaaggttg-tttctca 8404
Query: 807 gtgcttcatacgtgttggcaatatctttttgtggttcttattcggccanac-aaattttt 865
||||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 8405 gtgcttcatacgtgttgtcaatatctttttgt-gttcttattcggccagacaaaattttt 8463
Query: 866 tttttgggtcttatccacagcttt 889
||||||||||| ||||||||||||
Sbjct: 8464 tttttgggtctaatccacagcttt 8487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,210
Number of Sequences: 1807
Number of extensions: 10210
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)